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The map label for this gene is 150396640

Identifier: 150396640

GI number: 150396640

Start: 1508358

End: 1509242

Strand: Direct

Name: 150396640

Synonym: Smed_1426

Alternate gene names: NA

Gene position: 1508358-1509242 (Clockwise)

Preceding gene: 150396639

Following gene: 150396641

Centisome position: 39.88

GC content: 59.1

Gene sequence:

>885_bases
ATGGCAGTCGCTGCACGAGCCCTGTGGAAGGGCTACGTTCGGTTCGGCGAAGTGACCGCCCCAGTGGCGCTCTACACCGC
CACCTCGACTTCCGAGCGGATCTCTTTCCACACGGTGAACAAGGAAACGGGCAACCGTGTACGGCGAGAGTTCGTCGACA
GCGCGACCGGCAAGCCGGTAGAGAAAGAAGACCAGGTCAAGGGTTACGAGCTCGACAACGACAGATACGTCGTCCTCGAT
CCGGAGGAAGTTGCCTCTGCAGTGCCCGAGAGCGACAAAACGCTTCGAGTACAGGCATTCATCACCTGTGACGACATCGA
AAAGGTCTATTTCGACAAGCCCTATTACCTGACCCCGGACAAAATGGGCACCGAGGCCTATGCACTTTTGCGGGACGGCA
TGCAGAAGAAGAATGTCGCGGCGATCGCGCAGACAGTGCTCTTCCGCCGAATGCGCACAGTGTTGCTGCGCGCGCACGAC
AAAGGGCTGATCGCCACCACACTCAACTTCGACTATGAGGTCAGAAGCGCCAAAGAAGCCTTCAAGGACATTCCGGACAT
TAAGATTGAAGGCGAGATGCTGGAACTCGCAAAGCACATCATAGGCACGAAGAAGGGGACATTCTCGGCCGACGAGTTCG
ACGACCGCTATGAAGCCGCGCTCGCCGAGCTGATCAAAGCGAAGCTGGAAGGCAAGGCCCTGCCGAAGCGCGCTGCCCCG
AAAGTCTCGAAAGCAAACGATCTGCTGGAGGCGCTACGCCAGAGTGCGGGCATGAAAAAGCCGCCGGCAGCGTCGAAGAA
GCGTACCGGCAAGGCAGCAGCGGCTGAAGGCAAGAAAAAGGCGGCTGAGGAGGGCGCACCTGCCCAGCGTCGCCGCGCAG
GTTAA

Upstream 100 bases:

>100_bases
TTTCCTCAGCAAGATGGGGATCGGATGAATATATCGTCCGGTCCGGAACAAAGCAGAAAGCCTGTCGGTTGACTCCCTTG
GTTATGCAAAGGAGTTTTTC

Downstream 100 bases:

>100_bases
GAGAGGTGAACGATGGCGCCCCCTCGTCCATATTGGAAAGGCTACCTGAAGCTATCGCTCGTCACCTGCCCGGTCTCGAT
GATGCCCGCGACAAGCGAGT

Product: Ku family containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MAVAARALWKGYVRFGEVTAPVALYTATSTSERISFHTVNKETGNRVRREFVDSATGKPVEKEDQVKGYELDNDRYVVLD
PEEVASAVPESDKTLRVQAFITCDDIEKVYFDKPYYLTPDKMGTEAYALLRDGMQKKNVAAIAQTVLFRRMRTVLLRAHD
KGLIATTLNFDYEVRSAKEAFKDIPDIKIEGEMLELAKHIIGTKKGTFSADEFDDRYEAALAELIKAKLEGKALPKRAAP
KVSKANDLLEALRQSAGMKKPPAASKKRTGKAAAAEGKKKAAEEGAPAQRRRAG

Sequences:

>Translated_294_residues
MAVAARALWKGYVRFGEVTAPVALYTATSTSERISFHTVNKETGNRVRREFVDSATGKPVEKEDQVKGYELDNDRYVVLD
PEEVASAVPESDKTLRVQAFITCDDIEKVYFDKPYYLTPDKMGTEAYALLRDGMQKKNVAAIAQTVLFRRMRTVLLRAHD
KGLIATTLNFDYEVRSAKEAFKDIPDIKIEGEMLELAKHIIGTKKGTFSADEFDDRYEAALAELIKAKLEGKALPKRAAP
KVSKANDLLEALRQSAGMKKPPAASKKRTGKAAAAEGKKKAAEEGAPAQRRRAG
>Mature_293_residues
AVAARALWKGYVRFGEVTAPVALYTATSTSERISFHTVNKETGNRVRREFVDSATGKPVEKEDQVKGYELDNDRYVVLDP
EEVASAVPESDKTLRVQAFITCDDIEKVYFDKPYYLTPDKMGTEAYALLRDGMQKKNVAAIAQTVLFRRMRTVLLRAHDK
GLIATTLNFDYEVRSAKEAFKDIPDIKIEGEMLELAKHIIGTKKGTFSADEFDDRYEAALAELIKAKLEGKALPKRAAPK
VSKANDLLEALRQSAGMKKPPAASKKRTGKAAAAEGKKKAAEEGAPAQRRRAG

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 32546; Mature: 32414

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVAARALWKGYVRFGEVTAPVALYTATSTSERISFHTVNKETGNRVRREFVDSATGKPV
CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
EKEDQVKGYELDNDRYVVLDPEEVASAVPESDKTLRVQAFITCDDIEKVYFDKPYYLTPD
CCHHCCCCEEECCCCEEEECHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHCCCCCEECCC
KMGTEAYALLRDGMQKKNVAAIAQTVLFRRMRTVLLRAHDKGLIATTLNFDYEVRSAKEA
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
FKDIPDIKIEGEMLELAKHIIGTKKGTFSADEFDDRYEAALAELIKAKLEGKALPKRAAP
HHCCCCCEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KVSKANDLLEALRQSAGMKKPPAASKKRTGKAAAAEGKKKAAEEGAPAQRRRAG
CHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCHHHHCCC
>Mature Secondary Structure 
AVAARALWKGYVRFGEVTAPVALYTATSTSERISFHTVNKETGNRVRREFVDSATGKPV
CHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
EKEDQVKGYELDNDRYVVLDPEEVASAVPESDKTLRVQAFITCDDIEKVYFDKPYYLTPD
CCHHCCCCEEECCCCEEEECHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHCCCCCEECCC
KMGTEAYALLRDGMQKKNVAAIAQTVLFRRMRTVLLRAHDKGLIATTLNFDYEVRSAKEA
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
FKDIPDIKIEGEMLELAKHIIGTKKGTFSADEFDDRYEAALAELIKAKLEGKALPKRAAP
HHCCCCCEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KVSKANDLLEALRQSAGMKKPPAASKKRTGKAAAAEGKKKAAEEGAPAQRRRAG
CHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA