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The map label for this gene is 150396641

Identifier: 150396641

GI number: 150396641

Start: 1509255

End: 1510070

Strand: Direct

Name: 150396641

Synonym: Smed_1427

Alternate gene names: NA

Gene position: 1509255-1510070 (Clockwise)

Preceding gene: 150396640

Following gene: 150396642

Centisome position: 39.91

GC content: 57.35

Gene sequence:

>816_bases
ATGGCGCCCCCTCGTCCATATTGGAAAGGCTACCTGAAGCTATCGCTCGTCACCTGCCCGGTCTCGATGATGCCCGCGAC
AAGCGAGTCCGAGAAGGTCCGCTTCCACACCCTGAACCGCAAGACGAACAACCGCCTCGTCTCCAGATATGTCGACGCGG
AAACCGGGAAAGAGGTCGACGAAGAGGACGAGGTGAAAGGATATGAGCGCGCCGAAGGCGACTTCCTCGTAATCGAAGAT
GAGGAGTTGGAAAGCGTGGCACTTGAAAGTGCCAGGACCATCGACATCGAGAAGTTCGTGCCTCGGAATACGATCGAATG
GATCTGGTTGGAGAAACCCCACTACCTGTCACCGTCTGACGAGGTCGGCCATGAAGCCTTCAGCGTTATCCGGGACGCGA
TGGAGCGCGAGAAGGTCGTCGGCATGTCAAGGCTCGTGATCGGCCGGCGCGAGCGTGCCGTGATGCTCGAGCCATGCGGG
AAAGGCATTATCGTTTGGACGCTGCGCTATGGAGACGAAGTGAGAAAGCCGGAACACTATTTCGGTGACATCGCCAACAG
CGACAATGACCCCAAGCTGATGAGCCTGATTACGACGCTGATCGAGGAGCGAAGCAAACCGTGGAGCCCCGACATGGTCG
GCGATCCAGTGCAGGAGAAACTCCTGAAAATCATCGAGAGCAAGCGAAAGTCGGCCAGGAAAGTCGCCGAGCCGAAGGGC
AAGGACAAAGCGCCTGCGCATGCCGGAAACGTCATCGATCTGATGTCGGCCCTGAAGGAGAGCCTCGAGAAAAAAAAGGG
CAGCAAGAAGTCATAG

Upstream 100 bases:

>100_bases
GAAGCGTACCGGCAAGGCAGCAGCGGCTGAAGGCAAGAAAAAGGCGGCTGAGGAGGGCGCACCTGCCCAGCGTCGCCGCG
CAGGTTAAGAGAGGTGAACG

Downstream 100 bases:

>100_bases
CTGGCCGCCGGGATTGTCGATCGGTCTCATTCGCGACACCGTTTTGACACAATAACGCCTATGATAGCCCGTTCGCCGTG
GTTTCGGTATATAGGTTTAC

Product: Ku family containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MAPPRPYWKGYLKLSLVTCPVSMMPATSESEKVRFHTLNRKTNNRLVSRYVDAETGKEVDEEDEVKGYERAEGDFLVIED
EELESVALESARTIDIEKFVPRNTIEWIWLEKPHYLSPSDEVGHEAFSVIRDAMEREKVVGMSRLVIGRRERAVMLEPCG
KGIIVWTLRYGDEVRKPEHYFGDIANSDNDPKLMSLITTLIEERSKPWSPDMVGDPVQEKLLKIIESKRKSARKVAEPKG
KDKAPAHAGNVIDLMSALKESLEKKKGSKKS

Sequences:

>Translated_271_residues
MAPPRPYWKGYLKLSLVTCPVSMMPATSESEKVRFHTLNRKTNNRLVSRYVDAETGKEVDEEDEVKGYERAEGDFLVIED
EELESVALESARTIDIEKFVPRNTIEWIWLEKPHYLSPSDEVGHEAFSVIRDAMEREKVVGMSRLVIGRRERAVMLEPCG
KGIIVWTLRYGDEVRKPEHYFGDIANSDNDPKLMSLITTLIEERSKPWSPDMVGDPVQEKLLKIIESKRKSARKVAEPKG
KDKAPAHAGNVIDLMSALKESLEKKKGSKKS
>Mature_270_residues
APPRPYWKGYLKLSLVTCPVSMMPATSESEKVRFHTLNRKTNNRLVSRYVDAETGKEVDEEDEVKGYERAEGDFLVIEDE
ELESVALESARTIDIEKFVPRNTIEWIWLEKPHYLSPSDEVGHEAFSVIRDAMEREKVVGMSRLVIGRRERAVMLEPCGK
GIIVWTLRYGDEVRKPEHYFGDIANSDNDPKLMSLITTLIEERSKPWSPDMVGDPVQEKLLKIIESKRKSARKVAEPKGK
DKAPAHAGNVIDLMSALKESLEKKKGSKKS

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 30870; Mature: 30739

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPPRPYWKGYLKLSLVTCPVSMMPATSESEKVRFHTLNRKTNNRLVSRYVDAETGKEVD
CCCCCCCHHHEEEEEEEECCHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
EEDEVKGYERAEGDFLVIEDEELESVALESARTIDIEKFVPRNTIEWIWLEKPHYLSPSD
CHHHHCCHHCCCCCEEEEECCHHHHHHHHHHCEECHHHHCCCCCEEEEEECCCCCCCCCH
EVGHEAFSVIRDAMEREKVVGMSRLVIGRRERAVMLEPCGKGIIVWTLRYGDEVRKPEHY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHH
FGDIANSDNDPKLMSLITTLIEERSKPWSPDMVGDPVQEKLLKIIESKRKSARKVAEPKG
HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
KDKAPAHAGNVIDLMSALKESLEKKKGSKKS
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
APPRPYWKGYLKLSLVTCPVSMMPATSESEKVRFHTLNRKTNNRLVSRYVDAETGKEVD
CCCCCCHHHEEEEEEEECCHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
EEDEVKGYERAEGDFLVIEDEELESVALESARTIDIEKFVPRNTIEWIWLEKPHYLSPSD
CHHHHCCHHCCCCCEEEEECCHHHHHHHHHHCEECHHHHCCCCCEEEEEECCCCCCCCCH
EVGHEAFSVIRDAMEREKVVGMSRLVIGRRERAVMLEPCGKGIIVWTLRYGDEVRKPEHY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHH
FGDIANSDNDPKLMSLITTLIEERSKPWSPDMVGDPVQEKLLKIIESKRKSARKVAEPKG
HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
KDKAPAHAGNVIDLMSALKESLEKKKGSKKS
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA