Click here to switch to the map view.

The map label for this gene is yccV [C]

Identifier: 150396604

GI number: 150396604

Start: 1465780

End: 1466109

Strand: Direct

Name: yccV [C]

Synonym: Smed_1390

Alternate gene names: 150396604

Gene position: 1465780-1466109 (Clockwise)

Preceding gene: 150396603

Following gene: 150396609

Centisome position: 38.76

GC content: 55.45

Gene sequence:

>330_bases
ATGAAACAAAGAAACGCCAAATTTGAGATCGGACAGGTGGTTCGCCATCGGATGTTCCCGTTCCGCGGCGTCATCTTCGA
CGTCGACCCGGAATATGCGAACACCGATGAATGGTGGAATGCGATTCCGCAGGAGATCAGGCCCGAAAAGGACCAGCCCT
TCTATCATCTGTTCGCAGAAAACGAAGAAAGCGAGTACGTCGCCTATGTATCGGAACAGAATCTCGTTTCCGACGAGAGC
GACAGGCCGGTCCGCCACCCCCAGGTAGACGCCCTGTTCGAACGGGCCGATGCCGGGCACTATAAGCCCAAGGCGGTCTA
TCAGCATTAG

Upstream 100 bases:

>100_bases
TTCAGTCAATGCCGATGGAAGCTCGCTGACGGGGGGCGCTTCCCTCTTGATGTTCCATATGCGACAACCCAGATAACTGT
CTGAAAGGATGTGTTGCGTC

Downstream 100 bases:

>100_bases
GGCGATTGCAGGCAAGCGCAGCGGTTTTTCGCGCGGTCTGAGCCCGGCGCAAGCCGGGCTTTTTCATGCTTGGGCCTGCC
GCTTTGCCGGATGGCAATCG

Product: hemimethylated DNA binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MKQRNAKFEIGQVVRHRMFPFRGVIFDVDPEYANTDEWWNAIPQEIRPEKDQPFYHLFAENEESEYVAYVSEQNLVSDES
DRPVRHPQVDALFERADAGHYKPKAVYQH

Sequences:

>Translated_109_residues
MKQRNAKFEIGQVVRHRMFPFRGVIFDVDPEYANTDEWWNAIPQEIRPEKDQPFYHLFAENEESEYVAYVSEQNLVSDES
DRPVRHPQVDALFERADAGHYKPKAVYQH
>Mature_109_residues
MKQRNAKFEIGQVVRHRMFPFRGVIFDVDPEYANTDEWWNAIPQEIRPEKDQPFYHLFAENEESEYVAYVSEQNLVSDES
DRPVRHPQVDALFERADAGHYKPKAVYQH

Specific function: Unknown

COG id: COG3785

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12996; Mature: 12996

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQRNAKFEIGQVVRHRMFPFRGVIFDVDPEYANTDEWWNAIPQEIRPEKDQPFYHLFAE
CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCHHCCCCCCCCEEEEEEC
NEESEYVAYVSEQNLVSDESDRPVRHPQVDALFERADAGHYKPKAVYQH
CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKQRNAKFEIGQVVRHRMFPFRGVIFDVDPEYANTDEWWNAIPQEIRPEKDQPFYHLFAE
CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCHHCCCCCCCCEEEEEEC
NEESEYVAYVSEQNLVSDESDRPVRHPQVDALFERADAGHYKPKAVYQH
CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA