| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
Click here to switch to the map view.
The map label for this gene is 150396496
Identifier: 150396496
GI number: 150396496
Start: 1371613
End: 1373427
Strand: Direct
Name: 150396496
Synonym: Smed_1278
Alternate gene names: NA
Gene position: 1371613-1373427 (Clockwise)
Preceding gene: 150396494
Following gene: 150396497
Centisome position: 36.27
GC content: 63.42
Gene sequence:
>1815_bases ATGACCGAAATTGCCGCAAATCAGGTACGTGCTCCTGAGCGAATTCTTACAGCCGGCCCGCTTTCCGCAGAATTGGTGGC GGGCAACTTGCGAACGATCCGATGGCACGGTCACGAAGCGATCCGCGCCATCGCATATCTCGTGCGTGACGAGAACTGGG GCAATTATCCACTGCGGATCTCCGGACTGGATGTCGATGAGCAAGGCGACAGTTTCGTCGTATCCTACCAAGCGGAAGCG GTCTCCACGGCGGGTGCGCGGCTGGCGATCAGCGTCCGGATAGCCGGCAGTTCCGGAGGCAAGCTCGTCTTTGAAGCCGA TGCCGTAGCGGATGCCGACTTCGGAACGAATCGCTGTGGTTTTACGATTCTGCACCCGATCGTCGGCGTTGCCGGACAGC CAGCGACGGTGGAACATACGGACGGCACGGTCCGCGAGTCGCGTTTCCCCGATTTGATCGAACCGTCACAGCCTTTTCTG GATATGCGTGCGATCACGCATGCCATCGCTCCCGGCGCCAGCGTCGAGTGCCGCATGGAAGGCGACACATTCGAGATGGA GGACCAGCGGAACTGGACCGATGCGTCCTACAAGACCTATGTCCGGCCGCTTGCGCTCCCTTGGCCCTATGTAGTGCCGG CGGGTGCCGCCAACAGGCAGGCCATTACCCTGACCTTTTCCGGGCGGCCGGCGGCCGTGATCTGTGCCGCGGAACGCAGC GCGCCGGTTCGCCTGTCGCTTGGACCGGAGGCTGGCCGGGTCCCGGCTTTCGGTCTCGGCATCCGTCCCGAGGACCTTCC GTCGACATTCGCGTCCCTGGACGCCTTACGCGAAATCGCCCCCCAGCATCTTGTGCTGAATTTCAACCCGCTTGCGGGTC ATGATTCGACGGCGCTGGAGGCCTATGCGAAGCTATTGTCCGTCTATCGCGCCGCGGCCACACTGGAATTGGTGCTGCCA TGCAGGCAGGCGCCGGATGCTGAGATGCGCGAGGCGGCTGCCGCGGTTGAAAGGGCCGGCCTGGTCCTTTCTGCGATTGC CGTCAGTCCGGCGCCGGATCTCAAATCGACGCCGCCCGGCAGTGCCTGGCCGGAATGCCCGCCACTGGACGAGGTTTACG CGGCGGCGCGAAAGGCCTTCCCAGGTCTGCCGCTCGGTGGTGGCATGTTCAGCTATTTCACCGAATTGAACCGCAAGCGT CCCCCGGTCCATTTGCTGGATTTCATCACCCACACGACCTCGCCCCTCGTGCACGCCGCGGACGATCGCAGTGTCATGGA AACACTCGAGGCTCTGCCTTTCGTCACCCGCTCCGTTCGCGATTTTGCGGAACGGCTGCCCTATCGTATCGGCCCGTCCT CGATCGGCATGCGCAGCAACCCCTACGGGGCTGCGCTGAATCCCAATTCGAACGGGGAACGGATGACCATGACGGCCCAC GATCCCCGCCAGACGACGGCTTTCGCCGCTGCCTGGATGGTCGGCTATGCGGCGGCCGTCGCTAGTGCGGGTCTCGACGT CCTAACGCTCGGTTCGCTGGCGGGACCGTTCGGCGTCGTCGGTGAGGGAATTCGCTATCCGGCGTTCAGGGCGGCATGCC GCCTGTCCCGGTTTGCCGGAACGCGGGCTCGTCTGGTCGAAAGTTCCGACCCGGTTCGGGTCCTGGCGCTTTGCGGCGGA AACACCGTTCTGGTTGCGAATATTTCGCCGGAACGCCTCGAAGTCGTGCTTGACGGGGCAAGTGCCGACGAAGCGCTCCC GGTTGTCATCGAAGCATATGGGATTTACGAGTTCGACGTGAAGGCGCGCGGATGA
Upstream 100 bases:
>100_bases GAAGGTACGATCATTGACTCATCATACCAGTTCGGTTACTCGAATGAGCAAGACGGCTGGAGGAGGTCCAAATGACATCG AGTGCGATGGATGGGGTGGC
Downstream 100 bases:
>100_bases GCAAGCCTCTGCTGACCTATTATGGCGACGACCTCACTGGTTCCACGGACGTGATGGAGGCGCTCGCCACGCGCGGCTGC CCGACCGTGCTTTTCACCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 604; Mature: 603
Protein sequence:
>604_residues MTEIAANQVRAPERILTAGPLSAELVAGNLRTIRWHGHEAIRAIAYLVRDENWGNYPLRISGLDVDEQGDSFVVSYQAEA VSTAGARLAISVRIAGSSGGKLVFEADAVADADFGTNRCGFTILHPIVGVAGQPATVEHTDGTVRESRFPDLIEPSQPFL DMRAITHAIAPGASVECRMEGDTFEMEDQRNWTDASYKTYVRPLALPWPYVVPAGAANRQAITLTFSGRPAAVICAAERS APVRLSLGPEAGRVPAFGLGIRPEDLPSTFASLDALREIAPQHLVLNFNPLAGHDSTALEAYAKLLSVYRAAATLELVLP CRQAPDAEMREAAAAVERAGLVLSAIAVSPAPDLKSTPPGSAWPECPPLDEVYAAARKAFPGLPLGGGMFSYFTELNRKR PPVHLLDFITHTTSPLVHAADDRSVMETLEALPFVTRSVRDFAERLPYRIGPSSIGMRSNPYGAALNPNSNGERMTMTAH DPRQTTAFAAAWMVGYAAAVASAGLDVLTLGSLAGPFGVVGEGIRYPAFRAACRLSRFAGTRARLVESSDPVRVLALCGG NTVLVANISPERLEVVLDGASADEALPVVIEAYGIYEFDVKARG
Sequences:
>Translated_604_residues MTEIAANQVRAPERILTAGPLSAELVAGNLRTIRWHGHEAIRAIAYLVRDENWGNYPLRISGLDVDEQGDSFVVSYQAEA VSTAGARLAISVRIAGSSGGKLVFEADAVADADFGTNRCGFTILHPIVGVAGQPATVEHTDGTVRESRFPDLIEPSQPFL DMRAITHAIAPGASVECRMEGDTFEMEDQRNWTDASYKTYVRPLALPWPYVVPAGAANRQAITLTFSGRPAAVICAAERS APVRLSLGPEAGRVPAFGLGIRPEDLPSTFASLDALREIAPQHLVLNFNPLAGHDSTALEAYAKLLSVYRAAATLELVLP CRQAPDAEMREAAAAVERAGLVLSAIAVSPAPDLKSTPPGSAWPECPPLDEVYAAARKAFPGLPLGGGMFSYFTELNRKR PPVHLLDFITHTTSPLVHAADDRSVMETLEALPFVTRSVRDFAERLPYRIGPSSIGMRSNPYGAALNPNSNGERMTMTAH DPRQTTAFAAAWMVGYAAAVASAGLDVLTLGSLAGPFGVVGEGIRYPAFRAACRLSRFAGTRARLVESSDPVRVLALCGG NTVLVANISPERLEVVLDGASADEALPVVIEAYGIYEFDVKARG >Mature_603_residues TEIAANQVRAPERILTAGPLSAELVAGNLRTIRWHGHEAIRAIAYLVRDENWGNYPLRISGLDVDEQGDSFVVSYQAEAV STAGARLAISVRIAGSSGGKLVFEADAVADADFGTNRCGFTILHPIVGVAGQPATVEHTDGTVRESRFPDLIEPSQPFLD MRAITHAIAPGASVECRMEGDTFEMEDQRNWTDASYKTYVRPLALPWPYVVPAGAANRQAITLTFSGRPAAVICAAERSA PVRLSLGPEAGRVPAFGLGIRPEDLPSTFASLDALREIAPQHLVLNFNPLAGHDSTALEAYAKLLSVYRAAATLELVLPC RQAPDAEMREAAAAVERAGLVLSAIAVSPAPDLKSTPPGSAWPECPPLDEVYAAARKAFPGLPLGGGMFSYFTELNRKRP PVHLLDFITHTTSPLVHAADDRSVMETLEALPFVTRSVRDFAERLPYRIGPSSIGMRSNPYGAALNPNSNGERMTMTAHD PRQTTAFAAAWMVGYAAAVASAGLDVLTLGSLAGPFGVVGEGIRYPAFRAACRLSRFAGTRARLVESSDPVRVLALCGGN TVLVANISPERLEVVLDGASADEALPVVIEAYGIYEFDVKARG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64404; Mature: 64273
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEIAANQVRAPERILTAGPLSAELVAGNLRTIRWHGHEAIRAIAYLVRDENWGNYPLRI CCCCCCHHCCCCHHHEECCCCCCEEEECCEEEEEECCHHHHHHHHHHHCCCCCCCCCEEE SGLDVDEQGDSFVVSYQAEAVSTAGARLAISVRIAGSSGGKLVFEADAVADADFGTNRCG ECCCCCCCCCEEEEEEEHHHHHCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC FTILHPIVGVAGQPATVEHTDGTVRESRFPDLIEPSQPFLDMRAITHAIAPGASVECRME HHHHHHHHCCCCCCCEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC GDTFEMEDQRNWTDASYKTYVRPLALPWPYVVPAGAANRQAITLTFSGRPAAVICAAERS CCEEEECCCCCCCCCCHHHHHCEECCCCCCEECCCCCCCEEEEEEECCCCEEEEEEECCC APVRLSLGPEAGRVPAFGLGIRPEDLPSTFASLDALREIAPQHLVLNFNPLAGHDSTALE CCEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH AYAKLLSVYRAAATLELVLPCRQAPDAEMREAAAAVERAGLVLSAIAVSPAPDLKSTPPG HHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCC SAWPECPPLDEVYAAARKAFPGLPLGGGMFSYFTELNRKRPPVHLLDFITHTTSPLVHAA CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEC DDRSVMETLEALPFVTRSVRDFAERLPYRIGPSSIGMRSNPYGAALNPNSNGERMTMTAH CCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEECCCCCCCEEEEEEC DPRQTTAFAAAWMVGYAAAVASAGLDVLTLGSLAGPFGVVGEGIRYPAFRAACRLSRFAG CCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHCC TRARLVESSDPVRVLALCGGNTVLVANISPERLEVVLDGASADEALPVVIEAYGIYEFDV CHHEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECEEEEEE KARG EECC >Mature Secondary Structure TEIAANQVRAPERILTAGPLSAELVAGNLRTIRWHGHEAIRAIAYLVRDENWGNYPLRI CCCCCHHCCCCHHHEECCCCCCEEEECCEEEEEECCHHHHHHHHHHHCCCCCCCCCEEE SGLDVDEQGDSFVVSYQAEAVSTAGARLAISVRIAGSSGGKLVFEADAVADADFGTNRCG ECCCCCCCCCEEEEEEEHHHHHCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC FTILHPIVGVAGQPATVEHTDGTVRESRFPDLIEPSQPFLDMRAITHAIAPGASVECRME HHHHHHHHCCCCCCCEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC GDTFEMEDQRNWTDASYKTYVRPLALPWPYVVPAGAANRQAITLTFSGRPAAVICAAERS CCEEEECCCCCCCCCCHHHHHCEECCCCCCEECCCCCCCEEEEEEECCCCEEEEEEECCC APVRLSLGPEAGRVPAFGLGIRPEDLPSTFASLDALREIAPQHLVLNFNPLAGHDSTALE CCEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH AYAKLLSVYRAAATLELVLPCRQAPDAEMREAAAAVERAGLVLSAIAVSPAPDLKSTPPG HHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCC SAWPECPPLDEVYAAARKAFPGLPLGGGMFSYFTELNRKRPPVHLLDFITHTTSPLVHAA CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEC DDRSVMETLEALPFVTRSVRDFAERLPYRIGPSSIGMRSNPYGAALNPNSNGERMTMTAH CCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEECCCCCCCEEEEEEC DPRQTTAFAAAWMVGYAAAVASAGLDVLTLGSLAGPFGVVGEGIRYPAFRAACRLSRFAG CCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHCC TRARLVESSDPVRVLALCGGNTVLVANISPERLEVVLDGASADEALPVVIEAYGIYEFDV CHHEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECEEEEEE KARG EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA