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The map label for this gene is ygbK [C]

Identifier: 150396497

GI number: 150396497

Start: 1373424

End: 1374722

Strand: Direct

Name: ygbK [C]

Synonym: Smed_1279

Alternate gene names: 150396497

Gene position: 1373424-1374722 (Clockwise)

Preceding gene: 150396496

Following gene: 150396498

Centisome position: 36.32

GC content: 63.13

Gene sequence:

>1299_bases
ATGAGCAAGCCTCTGCTGACCTATTATGGCGACGACCTCACTGGTTCCACGGACGTGATGGAGGCGCTCGCCACGCGCGG
CTGCCCGACCGTGCTTTTCACCGACATTCCAGGTGAAGAATTAGCGGCGCGCTTCTCCGACCGGCAGGCGATTGGGATCG
CAGGAACCAGCCGCAGCGAAACGCCCGAATGGATGGACAGGAACCTGCCGCCTGTCTTCGAGTGGATGAAGCAGTCAGGG
TCCGTCCTTTGCCATTACAAGGTTTGCTCGACGTTCGATTCCAGTCCCAAAGCCGGAAGCATCGGCCGCGCTCTCGATAT
CGGCGCGGCGGTCTTCGATCAGGCTTCGACCCTTCTGGTCGTCGGCGCGCCGGAGTTGAAGCGCTATACGGCCTTCGGAC
ATCTGTTTGCGCATTTCGGGCCGGACATCTTCCGGATCGACCGGCATCCCGTCATGGCCCGCCATCCGGTGACGCCGGCG
GACGAGGCTGACCTGCGGCAGCACCTGATGCGCCAGACGAGGAAAACGGTAGGACTCGTCGATTTCGTGCAGTTGAAGAG
CCAAACCGCAATCGAAGAGCTGAAAGCCGTTGCAGTGCGGAATCCCGTGGCGCTCGTAGATGTGCTGGACGAAGAGAGCA
AGGTCCGGGCCGGACAACTCATCTGGGCCTCGCGCGACGTTTCGCCGTTCATCGTCGGCTCCTCGGGAGTGGAATATGCG
CTCGTGGCGGAAGCGGCCGGAACGCCGCTTGCGGGAGTGCCCCGCAATATTTCTCCGCCGGGAAGCCGTGGACCGATCGC
GGTTGTTTCAGGCAGTTGCTCGCCTACCACCGAACGGCAGATCCGCCATGCGATGCAAAACGGCTTCGAAGGCATTCACG
TCGACCCCCGCAGCCTGGTTGAAGACCAGGAATCGACCGTCGCGAATGCGCTGGTGACCGCGGGTGATGTGCTCGCCAGC
GGGAAAAGCCCGCTGTTCTACACGGCGATCGGCCAGGCGGATTACGGCGGCGCGGCGGAAAGCGGCCATGCCATCGGCTC
AGGGCTCGGTCGAATCCTTGCCGAGATTGTCGGGCGCCATGGCTTGCGCCGCGCGGTGGTTGCCGGCGGCGATACCTCCA
GTCACGCGATTCGGCGGCTGGCAATCCAGGCGCTGGAGCTGCTGGTTCCGCTGCCTGGCTGTCCCGGATCACCGCTTTGT
ACGGCTTCCACGGAGGCCGGCACCAGGACACTCGAAATCGCGTTCAAGGGCGGTCAGGTAGGCACGGATGCCTATTTCAC
GATCGTTCGAGACATCTGA

Upstream 100 bases:

>100_bases
AACGCCTCGAAGTCGTGCTTGACGGGGCAAGTGCCGACGAAGCGCTCCCGGTTGTCATCGAAGCATATGGGATTTACGAG
TTCGACGTGAAGGCGCGCGG

Downstream 100 bases:

>100_bases
CCGCACCGCAAGCAGTCAAGGCGCGTATACAAATAGCTCACGCGTTCGTGGATGCGCACGTGCGATATCCGACGGAACCG
CCTCCGGCGGAATGCCGTCA

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MSKPLLTYYGDDLTGSTDVMEALATRGCPTVLFTDIPGEELAARFSDRQAIGIAGTSRSETPEWMDRNLPPVFEWMKQSG
SVLCHYKVCSTFDSSPKAGSIGRALDIGAAVFDQASTLLVVGAPELKRYTAFGHLFAHFGPDIFRIDRHPVMARHPVTPA
DEADLRQHLMRQTRKTVGLVDFVQLKSQTAIEELKAVAVRNPVALVDVLDEESKVRAGQLIWASRDVSPFIVGSSGVEYA
LVAEAAGTPLAGVPRNISPPGSRGPIAVVSGSCSPTTERQIRHAMQNGFEGIHVDPRSLVEDQESTVANALVTAGDVLAS
GKSPLFYTAIGQADYGGAAESGHAIGSGLGRILAEIVGRHGLRRAVVAGGDTSSHAIRRLAIQALELLVPLPGCPGSPLC
TASTEAGTRTLEIAFKGGQVGTDAYFTIVRDI

Sequences:

>Translated_432_residues
MSKPLLTYYGDDLTGSTDVMEALATRGCPTVLFTDIPGEELAARFSDRQAIGIAGTSRSETPEWMDRNLPPVFEWMKQSG
SVLCHYKVCSTFDSSPKAGSIGRALDIGAAVFDQASTLLVVGAPELKRYTAFGHLFAHFGPDIFRIDRHPVMARHPVTPA
DEADLRQHLMRQTRKTVGLVDFVQLKSQTAIEELKAVAVRNPVALVDVLDEESKVRAGQLIWASRDVSPFIVGSSGVEYA
LVAEAAGTPLAGVPRNISPPGSRGPIAVVSGSCSPTTERQIRHAMQNGFEGIHVDPRSLVEDQESTVANALVTAGDVLAS
GKSPLFYTAIGQADYGGAAESGHAIGSGLGRILAEIVGRHGLRRAVVAGGDTSSHAIRRLAIQALELLVPLPGCPGSPLC
TASTEAGTRTLEIAFKGGQVGTDAYFTIVRDI
>Mature_431_residues
SKPLLTYYGDDLTGSTDVMEALATRGCPTVLFTDIPGEELAARFSDRQAIGIAGTSRSETPEWMDRNLPPVFEWMKQSGS
VLCHYKVCSTFDSSPKAGSIGRALDIGAAVFDQASTLLVVGAPELKRYTAFGHLFAHFGPDIFRIDRHPVMARHPVTPAD
EADLRQHLMRQTRKTVGLVDFVQLKSQTAIEELKAVAVRNPVALVDVLDEESKVRAGQLIWASRDVSPFIVGSSGVEYAL
VAEAAGTPLAGVPRNISPPGSRGPIAVVSGSCSPTTERQIRHAMQNGFEGIHVDPRSLVEDQESTVANALVTAGDVLASG
KSPLFYTAIGQADYGGAAESGHAIGSGLGRILAEIVGRHGLRRAVVAGGDTSSHAIRRLAIQALELLVPLPGCPGSPLCT
ASTEAGTRTLEIAFKGGQVGTDAYFTIVRDI

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=411, Percent_Identity=27.9805352798054, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 45795; Mature: 45663

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPLLTYYGDDLTGSTDVMEALATRGCPTVLFTDIPGEELAARFSDRQAIGIAGTSRSE
CCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCEEEEECCCCCC
TPEWMDRNLPPVFEWMKQSGSVLCHYKVCSTFDSSPKAGSIGRALDIGAAVFDQASTLLV
CHHHHHCCCCHHHHHHHCCCCEEEEEEEHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
VGAPELKRYTAFGHLFAHFGPDIFRIDRHPVMARHPVTPADEADLRQHLMRQTRKTVGLV
ECCCHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHH
DFVQLKSQTAIEELKAVAVRNPVALVDVLDEESKVRAGQLIWASRDVSPFIVGSSGVEYA
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCEE
LVAEAAGTPLAGVPRNISPPGSRGPIAVVSGSCSPTTERQIRHAMQNGFEGIHVDPRSLV
EEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
EDQESTVANALVTAGDVLASGKSPLFYTAIGQADYGGAAESGHAIGSGLGRILAEIVGRH
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
GLRRAVVAGGDTSSHAIRRLAIQALELLVPLPGCPGSPLCTASTEAGTRTLEIAFKGGQV
CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
GTDAYFTIVRDI
CCCEEEEEEECC
>Mature Secondary Structure 
SKPLLTYYGDDLTGSTDVMEALATRGCPTVLFTDIPGEELAARFSDRQAIGIAGTSRSE
CCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCEEEEECCCCCC
TPEWMDRNLPPVFEWMKQSGSVLCHYKVCSTFDSSPKAGSIGRALDIGAAVFDQASTLLV
CHHHHHCCCCHHHHHHHCCCCEEEEEEEHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
VGAPELKRYTAFGHLFAHFGPDIFRIDRHPVMARHPVTPADEADLRQHLMRQTRKTVGLV
ECCCHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHH
DFVQLKSQTAIEELKAVAVRNPVALVDVLDEESKVRAGQLIWASRDVSPFIVGSSGVEYA
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCEE
LVAEAAGTPLAGVPRNISPPGSRGPIAVVSGSCSPTTERQIRHAMQNGFEGIHVDPRSLV
EEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
EDQESTVANALVTAGDVLASGKSPLFYTAIGQADYGGAAESGHAIGSGLGRILAEIVGRH
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
GLRRAVVAGGDTSSHAIRRLAIQALELLVPLPGCPGSPLCTASTEAGTRTLEIAFKGGQV
CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
GTDAYFTIVRDI
CCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]