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The map label for this gene is ypfJ [H]

Identifier: 150396477

GI number: 150396477

Start: 1352284

End: 1353219

Strand: Direct

Name: ypfJ [H]

Synonym: Smed_1259

Alternate gene names: 150396477

Gene position: 1352284-1353219 (Clockwise)

Preceding gene: 150396473

Following gene: 150396479

Centisome position: 35.76

GC content: 62.07

Gene sequence:

>936_bases
ATGGAATGGAAGGGCCGCCGCCAGTCTGGAAACATCGAGGATCAGCGCGGAGCCGGCCCGCGCGGAGGAGGCAACCCCTT
CGGCCGAGGCGGTGGATTCCGCCTGCCGGGCGGCGGCGGCATGCGCCGCGCCGGCGGCGGCATGAGTTTCGGCACGCTCA
TATTCCTCGTTATTCTCTATTTCGTTCTGAAGGCGATGGGTATCGACATGCTGCAGGTGCTTGAAGGCGGTGGCCCGGCG
AACATGCCGGGCTTCGAGCAGAGCGACGGGTCCGGAGCGCCGCAGGGCACGGCCGAGGAAGAAGAGATGAAAGCCTTCAT
GGCCACGGTGCTTGCGGAAACGGAAGACACCTGGAACGGCATTTTTCAGGCGAGCGGCGAGCAGTACGAGGAACCTCGGC
TGGTGCTGTTCAGCGGCTCGGTCCGCTCGGCCTGCGGCTTTGCCTCTTCCGCCTCGGGTCCGTTCTATTGCCCCGGCGAT
CGTAGGGTCTATCTCGATATGGGCTTCTTCGACGAGCTGGCGCAGAAATTCGAAGCCTCCGGCGATTTCGCCCAGGCCTA
CGTGCTAGCGCACGAGGTTGGTCATCACGTTCAGAACCTGATCGGCGTATTGCCCAAATTCAACGAGATGCGGCAGCGCA
TGAGCGAGGCCGAGTCGAACCAGATGTCGGTTCGCGTCGAGCTGCAGGCGGACTGCTTTGCAGGAATCTGGGGCAAATAC
ACGGAACAGAAGGGCCTTCTGGAGCGCGGCGATCTGGAGGAGGCATTGAATGCCGCCACCCAGATCGGCGACGATACTTT
GCAGAAGCGCATGCAAGGTTATGTCGTCCCGGAGAGTTTCAACCACGGCACGTCCGAACAGCGGATGCGATGGTTCAAGC
GCGGTTTCGACAGCGGCAAGATGTCGGATTGCGACACTTTCTCCGGCGGTGTCTGA

Upstream 100 bases:

>100_bases
AACCGCGTGACCGCGATTGCGTTTTACAAGGATTGCCGCCCGGGCTTATAAAATCACTCAGCGCGCTAAAGTAGAGGCGA
CGCCTTCTGGAGGACAGATC

Downstream 100 bases:

>100_bases
CCGCGTGGCCGAACCGGGGCCATCCCCGGTCCGGCGCCGCTGTTCATTTCTGCCGCTCGCTGTCCATGTGTACAAGCTGC
GCTTCCGGATAGCGCGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MEWKGRRQSGNIEDQRGAGPRGGGNPFGRGGGFRLPGGGGMRRAGGGMSFGTLIFLVILYFVLKAMGIDMLQVLEGGGPA
NMPGFEQSDGSGAPQGTAEEEEMKAFMATVLAETEDTWNGIFQASGEQYEEPRLVLFSGSVRSACGFASSASGPFYCPGD
RRVYLDMGFFDELAQKFEASGDFAQAYVLAHEVGHHVQNLIGVLPKFNEMRQRMSEAESNQMSVRVELQADCFAGIWGKY
TEQKGLLERGDLEEALNAATQIGDDTLQKRMQGYVVPESFNHGTSEQRMRWFKRGFDSGKMSDCDTFSGGV

Sequences:

>Translated_311_residues
MEWKGRRQSGNIEDQRGAGPRGGGNPFGRGGGFRLPGGGGMRRAGGGMSFGTLIFLVILYFVLKAMGIDMLQVLEGGGPA
NMPGFEQSDGSGAPQGTAEEEEMKAFMATVLAETEDTWNGIFQASGEQYEEPRLVLFSGSVRSACGFASSASGPFYCPGD
RRVYLDMGFFDELAQKFEASGDFAQAYVLAHEVGHHVQNLIGVLPKFNEMRQRMSEAESNQMSVRVELQADCFAGIWGKY
TEQKGLLERGDLEEALNAATQIGDDTLQKRMQGYVVPESFNHGTSEQRMRWFKRGFDSGKMSDCDTFSGGV
>Mature_311_residues
MEWKGRRQSGNIEDQRGAGPRGGGNPFGRGGGFRLPGGGGMRRAGGGMSFGTLIFLVILYFVLKAMGIDMLQVLEGGGPA
NMPGFEQSDGSGAPQGTAEEEEMKAFMATVLAETEDTWNGIFQASGEQYEEPRLVLFSGSVRSACGFASSASGPFYCPGD
RRVYLDMGFFDELAQKFEASGDFAQAYVLAHEVGHHVQNLIGVLPKFNEMRQRMSEAESNQMSVRVELQADCFAGIWGKY
TEQKGLLERGDLEEALNAATQIGDDTLQKRMQGYVVPESFNHGTSEQRMRWFKRGFDSGKMSDCDTFSGGV

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=311, Percent_Identity=47.588424437299, Blast_Score=290, Evalue=6e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 33880; Mature: 33880

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWKGRRQSGNIEDQRGAGPRGGGNPFGRGGGFRLPGGGGMRRAGGGMSFGTLIFLVILY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHH
FVLKAMGIDMLQVLEGGGPANMPGFEQSDGSGAPQGTAEEEEMKAFMATVLAETEDTWNG
HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHH
IFQASGEQYEEPRLVLFSGSVRSACGFASSASGPFYCPGDRRVYLDMGFFDELAQKFEAS
HHHCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCEECCCCCEEEEECCHHHHHHHHHHCC
GDFAQAYVLAHEVGHHVQNLIGVLPKFNEMRQRMSEAESNQMSVRVELQADCFAGIWGKY
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHH
TEQKGLLERGDLEEALNAATQIGDDTLQKRMQGYVVPESFNHGTSEQRMRWFKRGFDSGK
HHHCCCHHHCCHHHHHHHHHHCCHHHHHHHHCCEECCCCCCCCCHHHHHHHHHCCCCCCC
MSDCDTFSGGV
CCCCCCCCCCC
>Mature Secondary Structure
MEWKGRRQSGNIEDQRGAGPRGGGNPFGRGGGFRLPGGGGMRRAGGGMSFGTLIFLVILY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHH
FVLKAMGIDMLQVLEGGGPANMPGFEQSDGSGAPQGTAEEEEMKAFMATVLAETEDTWNG
HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHH
IFQASGEQYEEPRLVLFSGSVRSACGFASSASGPFYCPGDRRVYLDMGFFDELAQKFEAS
HHHCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCEECCCCCEEEEECCHHHHHHHHHHCC
GDFAQAYVLAHEVGHHVQNLIGVLPKFNEMRQRMSEAESNQMSVRVELQADCFAGIWGKY
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHH
TEQKGLLERGDLEEALNAATQIGDDTLQKRMQGYVVPESFNHGTSEQRMRWFKRGFDSGK
HHHCCCHHHCCHHHHHHHHHHCCHHHHHHHHCCEECCCCCCCCCHHHHHHHHHCCCCCCC
MSDCDTFSGGV
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]