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The map label for this gene is lpsE [H]

Identifier: 150396470

GI number: 150396470

Start: 1342505

End: 1343527

Strand: Direct

Name: lpsE [H]

Synonym: Smed_1252

Alternate gene names: 150396470

Gene position: 1342505-1343527 (Clockwise)

Preceding gene: 150396469

Following gene: 150396473

Centisome position: 35.5

GC content: 60.7

Gene sequence:

>1023_bases
ATGAAGGTCAGCCATTTTCATTTCGGCAAGGATGGCGGTGCCGAACGGTTCTTCGTGCATCTCGTCAATGCGCTTGCGGA
ACGTGGAGTGGAGCAGACAGCAACCATCCGTCCTGGACGCAGCTGGCGGCGCGACATCGAAGGCGTCGCGAAGATCAGGG
AAAGCCATTTCCGCAATCTCTCACTCGATCGAATTCTTCTGCCCTTGAAGGTGAAGCATATGGCGCGGCGCGAGAAGCCC
GATGTCCTGATGGCCTGGGCGCCGCGGGCAAGCGAGCTGATGCCAAACTATAGAGGCGCATTCAAGATCTCGCGTCTCGG
CGATTACCCGACTCGCCTCAGTTACTTCCGAAACACGGACTGTATCGTCTGCAATACACCGGGCATTGCCGAGCGCGTGC
GTGATCTCGGCTGGACGAGGGAAGTCAGGGTCATCTCCAATTTCACCGCGACCGGGCGTGTCGAGGCGGTAGACCGGGCG
AAACTGGACACGCCGGCCGATGCGCCCGTCGTGATGTCCATGGGACGTTTCGTCGAACGCAAGGGGTTCCATACGCTGAT
CGAAGCGGTGGCCAGACTGCCGGGCGTCTATCTTTGGCTGCTCGGCGACGGTGAGGAGGGCGACAATCTGCACAAGCTCT
CGTCTGACCTCGGCGTATCCGACCGGGTTCGCTTCGCCGGCTGGCAGAAAGATACGAGGCCCTATCTCGCTGCCGCCGAT
ATTTTTGCGATGTCGTCCAGTCACGAACCGCTTGGCAATGTTATCCTCGAGTCCTGGGCACAGGGGACGCCCGTCGTATC
GACCCGATCCGAGGGGCCGAAATGGTTCATGCGCGACGGCGAAAACGGCGTGATGGTCGAGATCGGCGATGCGGAGGGCT
TTGCACACGCCATCGGGCAGATCGTCGCCGACCCCACACTCGGCACGCGCCTTGCCGAGCGTGGACACGAGACGCTCATC
CGCCAGTTTTCGAAGGAAGCAATCACCGACGCCTATCTGCGGCTCTTTGCTTCGAAGACGTAG

Upstream 100 bases:

>100_bases
GACTAAGCGCCGCCGGCCGCGAAACCCTGCGGGCGCGCTTTTCCGAAAAGGCAATCACCGACGCTTATCTCGATCTTTTC
GCCAGGAGCGTCGCACGGCG

Downstream 100 bases:

>100_bases
GCCAATCCATTTCCTGGGATTGCTTCGGATCAGCGCGTAAGACTGTCGTAAACCGCGCCGATCGCGCGTGCTTCCCCTTC
GATGGCGAAGTTCTTTGCCG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKVSHFHFGKDGGAERFFVHLVNALAERGVEQTATIRPGRSWRRDIEGVAKIRESHFRNLSLDRILLPLKVKHMARREKP
DVLMAWAPRASELMPNYRGAFKISRLGDYPTRLSYFRNTDCIVCNTPGIAERVRDLGWTREVRVISNFTATGRVEAVDRA
KLDTPADAPVVMSMGRFVERKGFHTLIEAVARLPGVYLWLLGDGEEGDNLHKLSSDLGVSDRVRFAGWQKDTRPYLAAAD
IFAMSSSHEPLGNVILESWAQGTPVVSTRSEGPKWFMRDGENGVMVEIGDAEGFAHAIGQIVADPTLGTRLAERGHETLI
RQFSKEAITDAYLRLFASKT

Sequences:

>Translated_340_residues
MKVSHFHFGKDGGAERFFVHLVNALAERGVEQTATIRPGRSWRRDIEGVAKIRESHFRNLSLDRILLPLKVKHMARREKP
DVLMAWAPRASELMPNYRGAFKISRLGDYPTRLSYFRNTDCIVCNTPGIAERVRDLGWTREVRVISNFTATGRVEAVDRA
KLDTPADAPVVMSMGRFVERKGFHTLIEAVARLPGVYLWLLGDGEEGDNLHKLSSDLGVSDRVRFAGWQKDTRPYLAAAD
IFAMSSSHEPLGNVILESWAQGTPVVSTRSEGPKWFMRDGENGVMVEIGDAEGFAHAIGQIVADPTLGTRLAERGHETLI
RQFSKEAITDAYLRLFASKT
>Mature_340_residues
MKVSHFHFGKDGGAERFFVHLVNALAERGVEQTATIRPGRSWRRDIEGVAKIRESHFRNLSLDRILLPLKVKHMARREKP
DVLMAWAPRASELMPNYRGAFKISRLGDYPTRLSYFRNTDCIVCNTPGIAERVRDLGWTREVRVISNFTATGRVEAVDRA
KLDTPADAPVVMSMGRFVERKGFHTLIEAVARLPGVYLWLLGDGEEGDNLHKLSSDLGVSDRVRFAGWQKDTRPYLAAAD
IFAMSSSHEPLGNVILESWAQGTPVVSTRSEGPKWFMRDGENGVMVEIGDAEGFAHAIGQIVADPTLGTRLAERGHETLI
RQFSKEAITDAYLRLFASKT

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 38075; Mature: 38075

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSHFHFGKDGGAERFFVHLVNALAERGVEQTATIRPGRSWRRDIEGVAKIRESHFRNL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCCC
SLDRILLPLKVKHMARREKPDVLMAWAPRASELMPNYRGAFKISRLGDYPTRLSYFRNTD
CHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCEEECCCCCCHHHHHHHCCCC
CIVCNTPGIAERVRDLGWTREVRVISNFTATGRVEAVDRAKLDTPADAPVVMSMGRFVER
EEEECCCCHHHHHHHCCCCEEEHEEECCCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHH
KGFHTLIEAVARLPGVYLWLLGDGEEGDNLHKLSSDLGVSDRVRFAGWQKDTRPYLAAAD
CCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHH
IFAMSSSHEPLGNVILESWAQGTPVVSTRSEGPKWFMRDGENGVMVEIGDAEGFAHAIGQ
HHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCEEEEECCCCHHHHHHHH
IVADPTLGTRLAERGHETLIRQFSKEAITDAYLRLFASKT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVSHFHFGKDGGAERFFVHLVNALAERGVEQTATIRPGRSWRRDIEGVAKIRESHFRNL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCCC
SLDRILLPLKVKHMARREKPDVLMAWAPRASELMPNYRGAFKISRLGDYPTRLSYFRNTD
CHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCEEECCCCCCHHHHHHHCCCC
CIVCNTPGIAERVRDLGWTREVRVISNFTATGRVEAVDRAKLDTPADAPVVMSMGRFVER
EEEECCCCHHHHHHHCCCCEEEHEEECCCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHH
KGFHTLIEAVARLPGVYLWLLGDGEEGDNLHKLSSDLGVSDRVRFAGWQKDTRPYLAAAD
CCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHH
IFAMSSSHEPLGNVILESWAQGTPVVSTRSEGPKWFMRDGENGVMVEIGDAEGFAHAIGQ
HHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCEEEEECCCCHHHHHHHH
IVADPTLGTRLAERGHETLIRQFSKEAITDAYLRLFASKT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]