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The map label for this gene is lpsD [H]

Identifier: 150396469

GI number: 150396469

Start: 1341477

End: 1342508

Strand: Direct

Name: lpsD [H]

Synonym: Smed_1251

Alternate gene names: 150396469

Gene position: 1341477-1342508 (Clockwise)

Preceding gene: 150396468

Following gene: 150396470

Centisome position: 35.47

GC content: 59.01

Gene sequence:

>1032_bases
ATGAAAATTATGCATATTCACTTCGGCAAGGAAGGCGGAGCTGAGCGCTTCTTCGTCAATCTCGTCAATGCACTGCATGA
GAGGGGCGTCGAACAACGGGCGCTGATCCGGCCGGACCGCAGCTGGCGCAGGGACATAGAAAAGAGCGCGACGATCTATG
AAGGCGTTTTCCGGCGCATTTCGCTGTCTCGTTTCCTTTTGAAATGGAGGTTGAACCAGGTTCTTCGCGAGTTCAAACCG
GACATCATAATGGCGTGGCAGTTGCGGGCCAGCCGGTTCATGCCGGCCCATGCCAAGGCCTATCGCATATCTCGGCTGGG
AGATTATCCCGAACATCTCGGTTACTACACCAATGTCGAGACCCTCGTTTGCATCACGCCTGATATTGCCGCCAAGGTTC
GCGATTTTGGCTGGAACCGCGACATCGAGGTGATCGCTAATTTCACCCGCGCAGAGCCTGTCCCGCCCGTTGCGCGGGCC
GATTTGCAGACGCCGGAGGATGCCTTCGTCGTGGTCGGAATGGGACGCTTCGTGAAGCGAAAGGGCTTCGACGGGCTTAT
CCGAGCAGTGAAACAAGTGGAGAACACCTATCTGTGGCTCGTCGGGGACGGTCCGGATAGAGAACAGCTCGAACGGCTCA
CAGACGAACTCGGGCTTCGCGATCGCGTCCGCTTCACCGGTTGGCAGACAAACGCCTATGGTTTTCTGTCGGCCGGCGAC
GCCTTCGTCATCAATTCATCGCATGAGCCTCTCGGCAATGTCTGCTTCGAAGGATGGGGCGCCGGAAAACCCACGATAGC
CGCACGCGCGGAGGGCCCGTCCTGGGTTATGACGCATGATGGTGATGCTCTCATGGTCGATTGCGGTGACGACAGAGGGC
TTGCCGAGGCCATCCGCCGGCTGCGCGATGATCCTGCGCTTCGCGAGCGACTAAGCGCCGCCGGCCGCGAAACCCTGCGG
GCGCGCTTTTCCGAAAAGGCAATCACCGACGCTTATCTCGATCTTTTCGCCAGGAGCGTCGCACGGCGATGA

Upstream 100 bases:

>100_bases
TGCCTTTCTGACGGCAGCGAAGATCTATCAGCGGCACGCCCTGGAGGCGCGCCCGAATGTCGACGACGCGCTTTCGCGCT
GATCGATCAAAGGATTCAGC

Downstream 100 bases:

>100_bases
AGGTCAGCCATTTTCATTTCGGCAAGGATGGCGGTGCCGAACGGTTCTTCGTGCATCTCGTCAATGCGCTTGCGGAACGT
GGAGTGGAGCAGACAGCAAC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKIMHIHFGKEGGAERFFVNLVNALHERGVEQRALIRPDRSWRRDIEKSATIYEGVFRRISLSRFLLKWRLNQVLREFKP
DIIMAWQLRASRFMPAHAKAYRISRLGDYPEHLGYYTNVETLVCITPDIAAKVRDFGWNRDIEVIANFTRAEPVPPVARA
DLQTPEDAFVVVGMGRFVKRKGFDGLIRAVKQVENTYLWLVGDGPDREQLERLTDELGLRDRVRFTGWQTNAYGFLSAGD
AFVINSSHEPLGNVCFEGWGAGKPTIAARAEGPSWVMTHDGDALMVDCGDDRGLAEAIRRLRDDPALRERLSAAGRETLR
ARFSEKAITDAYLDLFARSVARR

Sequences:

>Translated_343_residues
MKIMHIHFGKEGGAERFFVNLVNALHERGVEQRALIRPDRSWRRDIEKSATIYEGVFRRISLSRFLLKWRLNQVLREFKP
DIIMAWQLRASRFMPAHAKAYRISRLGDYPEHLGYYTNVETLVCITPDIAAKVRDFGWNRDIEVIANFTRAEPVPPVARA
DLQTPEDAFVVVGMGRFVKRKGFDGLIRAVKQVENTYLWLVGDGPDREQLERLTDELGLRDRVRFTGWQTNAYGFLSAGD
AFVINSSHEPLGNVCFEGWGAGKPTIAARAEGPSWVMTHDGDALMVDCGDDRGLAEAIRRLRDDPALRERLSAAGRETLR
ARFSEKAITDAYLDLFARSVARR
>Mature_343_residues
MKIMHIHFGKEGGAERFFVNLVNALHERGVEQRALIRPDRSWRRDIEKSATIYEGVFRRISLSRFLLKWRLNQVLREFKP
DIIMAWQLRASRFMPAHAKAYRISRLGDYPEHLGYYTNVETLVCITPDIAAKVRDFGWNRDIEVIANFTRAEPVPPVARA
DLQTPEDAFVVVGMGRFVKRKGFDGLIRAVKQVENTYLWLVGDGPDREQLERLTDELGLRDRVRFTGWQTNAYGFLSAGD
AFVINSSHEPLGNVCFEGWGAGKPTIAARAEGPSWVMTHDGDALMVDCGDDRGLAEAIRRLRDDPALRERLSAAGRETLR
ARFSEKAITDAYLDLFARSVARR

Specific function: Adds A Galactose Goup To A Glucose Group Of Lps. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI226510984, Length=315, Percent_Identity=23.1746031746032, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 39108; Mature: 39108

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIMHIHFGKEGGAERFFVNLVNALHERGVEQRALIRPDRSWRRDIEKSATIYEGVFRRI
CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SLSRFLLKWRLNQVLREFKPDIIMAWQLRASRFMPAHAKAYRISRLGDYPEHLGYYTNVE
HHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCCCC
TLVCITPDIAAKVRDFGWNRDIEVIANFTRAEPVPPVARADLQTPEDAFVVVGMGRFVKR
EEEEECCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECHHHHHH
KGFDGLIRAVKQVENTYLWLVGDGPDREQLERLTDELGLRDRVRFTGWQTNAYGFLSAGD
CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECEECCCCEEEECCC
AFVINSSHEPLGNVCFEGWGAGKPTIAARAEGPSWVMTHDGDALMVDCGDDRGLAEAIRR
EEEECCCCCCHHHHHHCCCCCCCCCEEEECCCCCEEEEECCCEEEEECCCCCCHHHHHHH
LRDDPALRERLSAAGRETLRARFSEKAITDAYLDLFARSVARR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIMHIHFGKEGGAERFFVNLVNALHERGVEQRALIRPDRSWRRDIEKSATIYEGVFRRI
CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SLSRFLLKWRLNQVLREFKPDIIMAWQLRASRFMPAHAKAYRISRLGDYPEHLGYYTNVE
HHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCCCC
TLVCITPDIAAKVRDFGWNRDIEVIANFTRAEPVPPVARADLQTPEDAFVVVGMGRFVKR
EEEEECCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECHHHHHH
KGFDGLIRAVKQVENTYLWLVGDGPDREQLERLTDELGLRDRVRFTGWQTNAYGFLSAGD
CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECEECCCCEEEECCC
AFVINSSHEPLGNVCFEGWGAGKPTIAARAEGPSWVMTHDGDALMVDCGDDRGLAEAIRR
EEEECCCCCCHHHHHHCCCCCCCCCEEEECCCCCEEEEECCCEEEEECCCCCCHHHHHHH
LRDDPALRERLSAAGRETLRARFSEKAITDAYLDLFARSVARR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]