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The map label for this gene is lpsC [H]

Identifier: 150396468

GI number: 150396468

Start: 1340646

End: 1341458

Strand: Direct

Name: lpsC [H]

Synonym: Smed_1250

Alternate gene names: 150396468

Gene position: 1340646-1341458 (Clockwise)

Preceding gene: 150396467

Following gene: 150396469

Centisome position: 35.45

GC content: 59.41

Gene sequence:

>813_bases
ATGACAGCTAAGCTTCCGCTTTCAGCCTTCATCATCTGCCTGAACGAAGAGGCCTATCTCGGCAACTGCATCGAGAGCCT
CGAACAATGCGCCGAAATCGTGATCGTCGATTCCGGATCGACGGACGGCACTGCCGCCTTGGTGCAGTCTTATATCGACG
CGGGTTGGCCGATTCGTTTCATGCACGAGCCCTGGCGCGGTTATGCCGGACAGAAGCAGTTCGCGCTCGAGCAGTGCAGT
GAGCCCTGGTGCTTCAATATCGATGCGGACGAGAGGCTGGACGGGGCGCTGCGAAATCTGCTGCCCGAACTGCTCGCAAC
ATCAGACGAGATCGTCGGCTGGCGCGTGGCGCGTCGCCCCTATCTGATCGGCTATGGCTATACCCCCGAAAACGTGCGGG
AGCGGCGGAATTTGCGGCTGATCCGGCGTGGCAGGGGGGGCTACGATCTTAGCCAGAAAGTCCATGAAGGCATCGTGCCC
GATGGAAACGTCGGCAAAGCGCGCACCGGCAGCCTCCTTCATTTCCGTCCGCTGGTCATGGACGAACAGATCCTGAAGGA
AAACAAATATTCGACGTTGAAAGCGGACCAGCAGGTCGAATCCGGCAAGCGACCACGGTTCTACAAACTCGTCTTCGCCC
CGCCGATCTACTTTCTGAGGCTCTATTTCCGCAACGGTCTCTGGCGCTGCGGTCTGTCAGGCTTCATCGAAGCTATGACC
GGAGCGGTCTATGCCTTTCTGACGGCAGCGAAGATCTATCAGCGGCACGCCCTGGAGGCGCGCCCGAATGTCGACGACGC
GCTTTCGCGCTGA

Upstream 100 bases:

>100_bases
TGAGGTGCAGAGCGGGTTCCCACCCGGCACCACAAGCCAAGGTCTTGCGGACTGCCGTTTCGACCGGCTTCCAGGACGAG
AGCGAATGCGGGACGGCCCT

Downstream 100 bases:

>100_bases
TCGATCAAAGGATTCAGCATGAAAATTATGCATATTCACTTCGGCAAGGAAGGCGGAGCTGAGCGCTTCTTCGTCAATCT
CGTCAATGCACTGCATGAGA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MTAKLPLSAFIICLNEEAYLGNCIESLEQCAEIVIVDSGSTDGTAALVQSYIDAGWPIRFMHEPWRGYAGQKQFALEQCS
EPWCFNIDADERLDGALRNLLPELLATSDEIVGWRVARRPYLIGYGYTPENVRERRNLRLIRRGRGGYDLSQKVHEGIVP
DGNVGKARTGSLLHFRPLVMDEQILKENKYSTLKADQQVESGKRPRFYKLVFAPPIYFLRLYFRNGLWRCGLSGFIEAMT
GAVYAFLTAAKIYQRHALEARPNVDDALSR

Sequences:

>Translated_270_residues
MTAKLPLSAFIICLNEEAYLGNCIESLEQCAEIVIVDSGSTDGTAALVQSYIDAGWPIRFMHEPWRGYAGQKQFALEQCS
EPWCFNIDADERLDGALRNLLPELLATSDEIVGWRVARRPYLIGYGYTPENVRERRNLRLIRRGRGGYDLSQKVHEGIVP
DGNVGKARTGSLLHFRPLVMDEQILKENKYSTLKADQQVESGKRPRFYKLVFAPPIYFLRLYFRNGLWRCGLSGFIEAMT
GAVYAFLTAAKIYQRHALEARPNVDDALSR
>Mature_269_residues
TAKLPLSAFIICLNEEAYLGNCIESLEQCAEIVIVDSGSTDGTAALVQSYIDAGWPIRFMHEPWRGYAGQKQFALEQCSE
PWCFNIDADERLDGALRNLLPELLATSDEIVGWRVARRPYLIGYGYTPENVRERRNLRLIRRGRGGYDLSQKVHEGIVPD
GNVGKARTGSLLHFRPLVMDEQILKENKYSTLKADQQVESGKRPRFYKLVFAPPIYFLRLYFRNGLWRCGLSGFIEAMTG
AVYAFLTAAKIYQRHALEARPNVDDALSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 30642; Mature: 30511

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAKLPLSAFIICLNEEAYLGNCIESLEQCAEIVIVDSGSTDGTAALVQSYIDAGWPIRF
CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCCEEE
MHEPWRGYAGQKQFALEQCSEPWCFNIDADERLDGALRNLLPELLATSDEIVGWRVARRP
CCCCCCCCCCCHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCC
YLIGYGYTPENVRERRNLRLIRRGRGGYDLSQKVHEGIVPDGNVGKARTGSLLHFRPLVM
EEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
DEQILKENKYSTLKADQQVESGKRPRFYKLVFAPPIYFLRLYFRNGLWRCGLSGFIEAMT
HHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCHHHCCHHHHHHHHH
GAVYAFLTAAKIYQRHALEARPNVDDALSR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure 
TAKLPLSAFIICLNEEAYLGNCIESLEQCAEIVIVDSGSTDGTAALVQSYIDAGWPIRF
CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCCEEE
MHEPWRGYAGQKQFALEQCSEPWCFNIDADERLDGALRNLLPELLATSDEIVGWRVARRP
CCCCCCCCCCCHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCC
YLIGYGYTPENVRERRNLRLIRRGRGGYDLSQKVHEGIVPDGNVGKARTGSLLHFRPLVM
EEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
DEQILKENKYSTLKADQQVESGKRPRFYKLVFAPPIYFLRLYFRNGLWRCGLSGFIEAMT
HHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCHHHCCHHHHHHHHH
GAVYAFLTAAKIYQRHALEARPNVDDALSR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]