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The map label for this gene is ykfC [H]

Identifier: 150396441

GI number: 150396441

Start: 1306022

End: 1307281

Strand: Direct

Name: ykfC [H]

Synonym: Smed_1223

Alternate gene names: 150396441

Gene position: 1306022-1307281 (Clockwise)

Preceding gene: 150396440

Following gene: 150396442

Centisome position: 34.53

GC content: 56.11

Gene sequence:

>1260_bases
ATGACTTCGATAGATACGACAGACAAGCCGTTTCGAATTGAGAAGCGGCAAGTGTACGAAGCTTACAAAGCGGTCAAAGC
CAACCATGGCGCAGCCGGAGTGGACGGTGAGACCTTGGAGATGTTCGAGAAAGACCTTGCGAGAAATCTCTACAAGATCT
GGAATCGGATGTCGTCCGGGACCTACTTTCCGCCACCGGTGCGCGCCGTCTCCATTCCGAAGAAGACTGGTGGCGAAAGG
GTTTTGGGTGTGCCCACGGTCAGCGATCGGATCGCGCAGATGGTGGTCAAGCAGATGATTGAGCCGGATTTGGATTCCCT
CTTTCTTCCGGACTCCTACGGATACAGGCCGGGAAAATCGGCGTTGGATGCCGTTGGGGTGACGCGTCAGCGGTGCTGGA
AGTACGATTGGGTTCTGGAATTCGACATCAAAGGGCTGTTTGACAATCTTCCGCATGATCTCTTGCTGAAGGCGGTCAGA
AAGCACGTCAAATGCAACTGGGCTCTGCTCTACATCGAAAGATGGCTGGTCGCGCCCATGGAAAAGAACGGAGCAGTCAT
TGAGCGCACACGTGGTACCCCGCAAGGGGGCGTGGTCAGCCCAATCCTCTCGAATCTCTTCCTGCATTACGCGTTCGACG
TCTGGATGACTCGGACGCACCCTGATCTTCCATGGTGTCGGTATGCCGATGATGGTCTCGTGCACTGCCGGACCGAGCAA
GAAGCACAGGCCCTCAAGGCTGCGCTTCAAGCCCGGCTGGCAGAATGCGGACTTCAGATGCATCCGATCAAGACCCAGAT
CGTCTACTGCAAAGATAATCGGCGTCGGAAAAGGTATCCGACCGTCAAATTTGACTTCCTTGGATACCAATTCCGGCCGC
GACAGGTGGCGACGGCGCAGCAGGATGAGTTCTTCTGCGGCTACACCCCGGCGGCCAGCCCGACGGCGCTAAAGTCGATG
CGGGCCACGATCAAGAGCTTGAACATTCCGCGGCAAACGCCGGGGACGCTGGCTGAAATCGCCAAACAGATCAATCCGCT
CCTGCGGGGATGGATTGCCTATTATGGGCGGTTCAGTCGTTCGGCCCTGTTCTCTCTGGCTGACTACATCAATCGGAAGC
TCAAGGCCTGGATTATGCGAAAGTACAAGCGCTTTCGGTTCCACAAAACTCGGGCTTCGCAGTTCTTGCGGCAACTTGCT
CGAGATAATCGGGGCCTCTTCGTACACTGGCAGGCGTTCGGAACGAACCTGTTTGCCTGA

Upstream 100 bases:

>100_bases
GGGGCGGACCGATCCGTATGAGCGTTGAGGACCCTGTAATGGGGTCGGAGCAAAGGGGTCGGATCAGGTGGTCGTATTGC
TTGGAACAACTGGAAACAGG

Downstream 100 bases:

>100_bases
TGGGAGCGGTGTGAATCGAGAGGTTCACGCACCGTTCTACGAGAGGCCGGCAGGTGAAATCCCTCCGGCCTACTCACCCG
CCGCTTCCGCGGCTCGATCC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSGTYFPPPVRAVSIPKKTGGER
VLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVR
KHVKCNWALLYIERWLVAPMEKNGAVIERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTEQ
EAQALKAALQARLAECGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATAQQDEFFCGYTPAASPTALKSM
RATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFSRSALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLA
RDNRGLFVHWQAFGTNLFA

Sequences:

>Translated_419_residues
MTSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSGTYFPPPVRAVSIPKKTGGER
VLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVR
KHVKCNWALLYIERWLVAPMEKNGAVIERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTEQ
EAQALKAALQARLAECGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATAQQDEFFCGYTPAASPTALKSM
RATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFSRSALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLA
RDNRGLFVHWQAFGTNLFA
>Mature_418_residues
TSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSGTYFPPPVRAVSIPKKTGGERV
LGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRK
HVKCNWALLYIERWLVAPMEKNGAVIERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTEQE
AQALKAALQARLAECGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATAQQDEFFCGYTPAASPTALKSMR
ATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFSRSALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLAR
DNRGLFVHWQAFGTNLFA

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=382, Percent_Identity=25.3926701570681, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6226521, Length=217, Percent_Identity=29.0322580645161, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 48340; Mature: 48208

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSG
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
TYFPPPVRAVSIPKKTGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKS
CCCCCCCCEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHEECCCCCCCCCCHH
ALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKHVKCNWALLYIERWLVAPM
HHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHCCCHHHEEHHHHHHCCC
EKNGAVIERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTEQ
CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCEEEECCHH
EAQALKAALQARLAECGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATAQ
HHHHHHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCCCCCEEEECCCCEECCCHHCCCC
QDEFFCGYTPAASPTALKSMRATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFSR
CCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLARDNRGLFVHWQAFGTNLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
TSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
TYFPPPVRAVSIPKKTGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKS
CCCCCCCCEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHEECCCCCCCCCCHH
ALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKHVKCNWALLYIERWLVAPM
HHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHCCCHHHEEHHHHHHCCC
EKNGAVIERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTEQ
CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCEEEECCHH
EAQALKAALQARLAECGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATAQ
HHHHHHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCCCCCEEEECCCCEECCCHHCCCC
QDEFFCGYTPAASPTALKSMRATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFSR
CCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLARDNRGLFVHWQAFGTNLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]