| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is secD [H]
Identifier: 150396393
GI number: 150396393
Start: 1251265
End: 1253841
Strand: Direct
Name: secD [H]
Synonym: Smed_1174
Alternate gene names: 150396393
Gene position: 1251265-1253841 (Clockwise)
Preceding gene: 150396392
Following gene: 150396394
Centisome position: 33.09
GC content: 61.04
Gene sequence:
>2577_bases ATGCCCAGGTTTTCGCCGTTCAAGAACATTCTGATTTGGCTGGTCGTCCTGGCGGGCTTTGCCTGTGCGCTGCCAAATCT TCTTTCCAGGGAGCAGCTTGCCGATTGGCCGACATGGCTGCCGCACCGGCAGGTACCGCTCGGCCTCGATCTCAGTGGCG GCTCTCATATTGTCCTGCAGGTCAACCGCGAAGACATCGTTGCGGAGCGCCTGCATTCAACGATCGATGCCATCGCCGAT GCGTTGAGGCAGGCGGATATCCACTATACGGGTCTGTCAGGTAGCGGGCGGAGCCTGCAGTTTCGTCTCCGCGACGGAAC GAAGGCGCCTGCCGCGCGTGAGGCGTTGAAGGCTTTGTCCGCTCCCGTTCAGCAGGACGGCCTCTTTGGGAAGTCCATCC AGGAATTGGTCTACGAAGAAAGCGCGACCAACGACACGCTTCGGCTTCGCCTGACCGACGAAGGCATCGACTTCAGGGTC TCCGCCGCGGTTGCCCGTTCCGTCGAGGTCGTGCGCCGGCGCGTCGGCGAGGTCATCGCAGTTGCACCATCGATAGAGCG TCGGGAAAATGACCGCCTCAGCGTGCAGGTGCCCGGTTTGGACGAGCCGCAAAGGCTCAAAGATCTTCTTGCCCAGCGGG GCGACGTCGCTCTGAGGTGGCTGGACCTGTCGATGCCGGCACAGCAGGCCGTCGACACCAGGCCGCCGGCAGCTTCCGAG GTCCTCTATTCGCTCGACGATCCACCCATCCCCTACCTCGTGGAGCGACGAGCCTTCGCTGCAGCACCGGACTTCGTCGA GGCACAGCCGGGCTTCGACCCCGCAACGGCCGAACCTGTCGTAGATGTAAGGATCGCGGCGGGCGCAACCGAGCGGATTG CTCCGATCCTGCAGTCGGATCCAAGGAAGCAGTTTGCGATCGTACTCGACGGGCAGGTCATCTCGACCTCCGTTCTGGAC AGCGCCGTCTCTGGTGATGCCGTCCGGATTTCCGGAAATCTCTCGGAAGATGGTGCCAACGATCTCGCCGCTTTGATCCG TGCCGGTCCGCTTCCCGTTTCGCTGACCGTCATCGAGGAACGTACTGTCGGCCCGGAGGACGGGGCCGACGCAGTTGCAA ACGGCCTCACGGCCGGCCTGATCGCCGCCCTTGCGGTCGCGGCCTGTATGATCGGCTTTTACGGCTTCTTCGGCCTCGTC GCAGTCGTCGCCGTCATCGTCAACGTCGTACTGATAATCGCGGTATTGTCCGTCACCGGCGCCACGCTGACCTTGCCCGG AATTGCCGGGATTATCCTCACGATCGGAATTGCGGTCGACTCGAACGTTCTCATCTACGAGCGTCTCAGGGAAGAGGCAC GCAGCAGTGACAAGCCGTTGCGACGGGCGCTGGACGATGGCTTCGAACGCGTCTTGAGAAGCATCGTCGACTCGAACCTT ACGATATTCATCGCGGGCGTTATCCTGCTCTCTCTCGGCTCCGGCGCCTTCAGCGGGTTTGCGGTCACGCTTGCCGTCGG CAGCCTTACCACCATTCTAACCGCGCACAGCCTGACGCGCCGGCTTATCCGCGGCTGGTATCGCCGTCGTCGGCCGCACC GGCTGCCACGGGGCATTCGGACGGGATTTTTCAGTCGGGCAGACTTCCGTTTCATGGCGATCCGTAATCCGGTTTTCATT TTGATGACAGCTTTGTCGCTTGCTTCGCTGGTCCTCCTGACAAGCCTCGGGCTCAACATGGGAGCAGATTTCAGAGGTGG CTCCGTTATCGAGCTGCGGGCGCGAACCGGGGTGGCTGACCGTGCCGACATCCGTGCCCGCCTCGACGAACTGAACCTCG GAGAGGTTCAAATCGAGGAACTTGGTTCGGCGCGAGACGTTCTCATCCGTATCCCCTCGCAGGAAGCGGGCGACAATGCC GAGCAGACGGCAGTTGGTCTCGTTCGCGCAGAGCTCGAGGATCAGTATGACTTCCGGCGTGTCGCGGTGGTCGGTCCCGG CGTTTCCGGGGAGCTGACGCGGGCAGGATCGCTTGCTCTTGCTGCTGCGGTGCTGAGCGTTCTGCTTTATGTCTGGCTTC GTTTCGGCCGGCGATTTGCGTTAGGAGCCGTTGTCGCGACCTTGCACGATGTGCTGCTGACCCTCGGATTCCTTGGGCTG ACAGGCATTGAATTCAATCTCGCCAGCATTGCGGCGCTGCTGACGATCGTGTGCTATTCGCTGAGCGATACCATGGTGAT TTATGATCGAGTTCGGGAAAATCTGGTGCGCTATCGAAGGATGCCGCTTTCAGTCCTGATCGACACGTCGATCAATCAGA CCCTCTCGCGAACCGTTCTGACGTCCTTGACGACGATGCTTGCTCTCGTCGCGCTCTATCTGTTCGGGGGCAGCGTTCTT GTTCAGACCTTCAGTGCGACGCTCATATTCGGCGTACTTGTGGGCACAGTCTCTTCGATCTATGTCGCCGGACCGCTGCT CATTCTCTTCAACCGCCGAAACAGTCGGCTTGGTGGCACGGAGGACCCGAACAATCCGGATTCGCCGTCGAAGACAGAAG CAAAGGGTGCCGTCTGA
Upstream 100 bases:
>100_bases CATGGATCACGTTTGATTTTGGATCTGTCTGAGGCCAAAATCACCTGATTAGGGCAGGGGTCGCGACCGGCTGAGACCGG CGGATGGAGCATTTCGACGT
Downstream 100 bases:
>100_bases TCATGGCAAAAGGGATCGAAATGCGCGAAGCGCACTTTCCGGGACGGGCGCCTGTCGACGCTTACGGCAATGGCGGGTTC CGCTTCGCCGACATGTCGCA
Product: bifunctional preprotein translocase subunit SecD/SecF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 858; Mature: 857
Protein sequence:
>858_residues MPRFSPFKNILIWLVVLAGFACALPNLLSREQLADWPTWLPHRQVPLGLDLSGGSHIVLQVNREDIVAERLHSTIDAIAD ALRQADIHYTGLSGSGRSLQFRLRDGTKAPAAREALKALSAPVQQDGLFGKSIQELVYEESATNDTLRLRLTDEGIDFRV SAAVARSVEVVRRRVGEVIAVAPSIERRENDRLSVQVPGLDEPQRLKDLLAQRGDVALRWLDLSMPAQQAVDTRPPAASE VLYSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATAEPVVDVRIAAGATERIAPILQSDPRKQFAIVLDGQVISTSVLD SAVSGDAVRISGNLSEDGANDLAALIRAGPLPVSLTVIEERTVGPEDGADAVANGLTAGLIAALAVAACMIGFYGFFGLV AVVAVIVNVVLIIAVLSVTGATLTLPGIAGIILTIGIAVDSNVLIYERLREEARSSDKPLRRALDDGFERVLRSIVDSNL TIFIAGVILLSLGSGAFSGFAVTLAVGSLTTILTAHSLTRRLIRGWYRRRRPHRLPRGIRTGFFSRADFRFMAIRNPVFI LMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVADRADIRARLDELNLGEVQIEELGSARDVLIRIPSQEAGDNA EQTAVGLVRAELEDQYDFRRVAVVGPGVSGELTRAGSLALAAAVLSVLLYVWLRFGRRFALGAVVATLHDVLLTLGFLGL TGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRYRRMPLSVLIDTSINQTLSRTVLTSLTTMLALVALYLFGGSVL VQTFSATLIFGVLVGTVSSIYVAGPLLILFNRRNSRLGGTEDPNNPDSPSKTEAKGAV
Sequences:
>Translated_858_residues MPRFSPFKNILIWLVVLAGFACALPNLLSREQLADWPTWLPHRQVPLGLDLSGGSHIVLQVNREDIVAERLHSTIDAIAD ALRQADIHYTGLSGSGRSLQFRLRDGTKAPAAREALKALSAPVQQDGLFGKSIQELVYEESATNDTLRLRLTDEGIDFRV SAAVARSVEVVRRRVGEVIAVAPSIERRENDRLSVQVPGLDEPQRLKDLLAQRGDVALRWLDLSMPAQQAVDTRPPAASE VLYSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATAEPVVDVRIAAGATERIAPILQSDPRKQFAIVLDGQVISTSVLD SAVSGDAVRISGNLSEDGANDLAALIRAGPLPVSLTVIEERTVGPEDGADAVANGLTAGLIAALAVAACMIGFYGFFGLV AVVAVIVNVVLIIAVLSVTGATLTLPGIAGIILTIGIAVDSNVLIYERLREEARSSDKPLRRALDDGFERVLRSIVDSNL TIFIAGVILLSLGSGAFSGFAVTLAVGSLTTILTAHSLTRRLIRGWYRRRRPHRLPRGIRTGFFSRADFRFMAIRNPVFI LMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVADRADIRARLDELNLGEVQIEELGSARDVLIRIPSQEAGDNA EQTAVGLVRAELEDQYDFRRVAVVGPGVSGELTRAGSLALAAAVLSVLLYVWLRFGRRFALGAVVATLHDVLLTLGFLGL TGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRYRRMPLSVLIDTSINQTLSRTVLTSLTTMLALVALYLFGGSVL VQTFSATLIFGVLVGTVSSIYVAGPLLILFNRRNSRLGGTEDPNNPDSPSKTEAKGAV >Mature_857_residues PRFSPFKNILIWLVVLAGFACALPNLLSREQLADWPTWLPHRQVPLGLDLSGGSHIVLQVNREDIVAERLHSTIDAIADA LRQADIHYTGLSGSGRSLQFRLRDGTKAPAAREALKALSAPVQQDGLFGKSIQELVYEESATNDTLRLRLTDEGIDFRVS AAVARSVEVVRRRVGEVIAVAPSIERRENDRLSVQVPGLDEPQRLKDLLAQRGDVALRWLDLSMPAQQAVDTRPPAASEV LYSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATAEPVVDVRIAAGATERIAPILQSDPRKQFAIVLDGQVISTSVLDS AVSGDAVRISGNLSEDGANDLAALIRAGPLPVSLTVIEERTVGPEDGADAVANGLTAGLIAALAVAACMIGFYGFFGLVA VVAVIVNVVLIIAVLSVTGATLTLPGIAGIILTIGIAVDSNVLIYERLREEARSSDKPLRRALDDGFERVLRSIVDSNLT IFIAGVILLSLGSGAFSGFAVTLAVGSLTTILTAHSLTRRLIRGWYRRRRPHRLPRGIRTGFFSRADFRFMAIRNPVFIL MTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVADRADIRARLDELNLGEVQIEELGSARDVLIRIPSQEAGDNAE QTAVGLVRAELEDQYDFRRVAVVGPGVSGELTRAGSLALAAAVLSVLLYVWLRFGRRFALGAVVATLHDVLLTLGFLGLT GIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRYRRMPLSVLIDTSINQTLSRTVLTSLTTMLALVALYLFGGSVLV QTFSATLIFGVLVGTVSSIYVAGPLLILFNRRNSRLGGTEDPNNPDSPSKTEAKGAV
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=525, Percent_Identity=30.0952380952381, Blast_Score=222, Evalue=9e-59, Organism=Escherichia coli, GI1786610, Length=310, Percent_Identity=37.4193548387097, Blast_Score=189, Evalue=4e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 92284; Mature: 92153
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRFSPFKNILIWLVVLAGFACALPNLLSREQLADWPTWLPHRQVPLGLDLSGGSHIVLQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEE VNREDIVAERLHSTIDAIADALRQADIHYTGLSGSGRSLQFRLRDGTKAPAAREALKALS ECHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHC APVQQDGLFGKSIQELVYEESATNDTLRLRLTDEGIDFRVSAAVARSVEVVRRRVGEVIA CCCHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCEEE VAPSIERRENDRLSVQVPGLDEPQRLKDLLAQRGDVALRWLDLSMPAQQAVDTRPPAASE ECCCHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCCHHH VLYSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATAEPVVDVRIAAGATERIAPILQSD HHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCC PRKQFAIVLDGQVISTSVLDSAVSGDAVRISGNLSEDGANDLAALIRAGPLPVSLTVIEE CCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEC RTVGPEDGADAVANGLTAGLIAALAVAACMIGFYGFFGLVAVVAVIVNVVLIIAVLSVTG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ATLTLPGIAGIILTIGIAVDSNVLIYERLREEARSSDKPLRRALDDGFERVLRSIVDSNL CEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH TIFIAGVILLSLGSGAFSGFAVTLAVGSLTTILTAHSLTRRLIRGWYRRRRPHRLPRGIR HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH TGFFSRADFRFMAIRNPVFILMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVAD HCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC RADIRARLDELNLGEVQIEELGSARDVLIRIPSQEAGDNAEQTAVGLVRAELEDQYDFRR HHHHHHHHHCCCCCCEEHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEE VAVVGPGVSGELTRAGSLALAAAVLSVLLYVWLRFGRRFALGAVVATLHDVLLTLGFLGL EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH TGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRYRRMPLSVLIDTSINQTLSRTVL CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHH TSLTTMLALVALYLFGGSVLVQTFSATLIFGVLVGTVSSIYVAGPLLILFNRRNSRLGGT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCC EDPNNPDSPSKTEAKGAV CCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRFSPFKNILIWLVVLAGFACALPNLLSREQLADWPTWLPHRQVPLGLDLSGGSHIVLQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEE VNREDIVAERLHSTIDAIADALRQADIHYTGLSGSGRSLQFRLRDGTKAPAAREALKALS ECHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHC APVQQDGLFGKSIQELVYEESATNDTLRLRLTDEGIDFRVSAAVARSVEVVRRRVGEVIA CCCHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCEEE VAPSIERRENDRLSVQVPGLDEPQRLKDLLAQRGDVALRWLDLSMPAQQAVDTRPPAASE ECCCHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCCHHH VLYSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATAEPVVDVRIAAGATERIAPILQSD HHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCC PRKQFAIVLDGQVISTSVLDSAVSGDAVRISGNLSEDGANDLAALIRAGPLPVSLTVIEE CCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEC RTVGPEDGADAVANGLTAGLIAALAVAACMIGFYGFFGLVAVVAVIVNVVLIIAVLSVTG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ATLTLPGIAGIILTIGIAVDSNVLIYERLREEARSSDKPLRRALDDGFERVLRSIVDSNL CEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH TIFIAGVILLSLGSGAFSGFAVTLAVGSLTTILTAHSLTRRLIRGWYRRRRPHRLPRGIR HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH TGFFSRADFRFMAIRNPVFILMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVAD HCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC RADIRARLDELNLGEVQIEELGSARDVLIRIPSQEAGDNAEQTAVGLVRAELEDQYDFRR HHHHHHHHHCCCCCCEEHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEE VAVVGPGVSGELTRAGSLALAAAVLSVLLYVWLRFGRRFALGAVVATLHDVLLTLGFLGL EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH TGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRYRRMPLSVLIDTSINQTLSRTVL CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHH TSLTTMLALVALYLFGGSVLVQTFSATLIFGVLVGTVSSIYVAGPLLILFNRRNSRLGGT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCC EDPNNPDSPSKTEAKGAV CCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9826342 [H]