| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is yggG [H]
Identifier: 150395552
GI number: 150395552
Start: 355699
End: 356760
Strand: Direct
Name: yggG [H]
Synonym: Smed_0326
Alternate gene names: 150395552
Gene position: 355699-356760 (Clockwise)
Preceding gene: 150395551
Following gene: 150395554
Centisome position: 9.41
GC content: 65.16
Gene sequence:
>1062_bases TTGGCTTCTGACGGCCCCGCGATTGCCTCTGGGGAGTGGTACCCGCCGGGATCGGGCCGCTCGATCATCGCAAGCCTTGC CGAACGCGGCGGACGTTTGATCGTGCGCGATGAGAGCGGTGGCGAGCTTGCGGGGAGCATGCTGCCCTCGATCGAGATAT CGTCACGGGTGGGCCGTGTTGCGCGCCGGATCACCTTTCCGGACGGATCGACGTTCGAGACTGCCGAAAACGACGCGATC GACCGGTTCCTGGCCGGGAAGGGCCGCGTCCGGGAGGGGATTGTCCATCGGCTGGAGCGCTTCCATCCGCGGCTGATCGC TTTTGTCGCGGCCACGATCCTGCTCGGCGTGCTGATTTATCGCTTCGCACTGCCGCTGATGGTGGAGGTTGCCGTCGCCT TCACGCCGCCGGTCGTGCCGCGCATCATGTCGGCGAGCACGCTGGAAACGATGGATCGGACGCTGCTCGGGGATTCGAAG CTCGACGAAGCCCGGCGCGGCCGGATCGTCGAGGGGTTCCGTCGCGTCGCGGCGCTCTCCGGCAGAGGGGAGGCGGGCTA CACGCTGAACTTCCGCGAGGGCGGTCCGCTCGGCCCGAATGCTTTTGCCCTGCCCGACGGAACGTTGATCCTCACCGACG AACTGGTGGATCTCGCAGGCGAAGATACCGAAATGATCGTCGGTGTGCTGGCTCATGAGATCGGTCACGTGGAGCACGAG CACAGCCTGCGCCAGATCTATCGTGCTGCCGGGCTTACCGCCCTTATCATGCTGGTTGCGGGCGATATCGGTTCGGGAGC GGAGGACGTCCTGGTCCAGGGCGGCGGTCTTCTCGCGCTTTCCTATTCGCGATCCGCCGAAGCCGAAGCGGACAGGCATT CGGTCGAGCTGATGTTGAAGGCAGGCCTCGATCCGGGCGGGCTCGGCCGCTTCTTCCAACTGCTCGAAACAAAGCTGGAC GACCGCTCCGAGACGAGCATCCTTTCCACCCACCCCGGAACGCCCGAGCGGCGCAAGGCGATCGCCGATTGGATTGGCAA GGCAAGGAAGCGGCTTGAATAG
Upstream 100 bases:
>100_bases GGCATCCGCTTCGAGGGTGACGTCGGCGAGATCTTCTCGCAGATCGACCAGGAAGGTTCGGCGGTCGGCGCCGAGTTCAT GGATATAGAAGGCTTCGACT
Downstream 100 bases:
>100_bases CAGCGTGCAGAGCTCGCCGGGACAAAACGAAAACAGCGGGCATGGGCCCGCTGTCTCTCGTTCGTCAGTTCAGTCGGGTC AATCCTGCGGACCTTCGTTG
Product: peptidase M48 Ste24p
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MASDGPAIASGEWYPPGSGRSIIASLAERGGRLIVRDESGGELAGSMLPSIEISSRVGRVARRITFPDGSTFETAENDAI DRFLAGKGRVREGIVHRLERFHPRLIAFVAATILLGVLIYRFALPLMVEVAVAFTPPVVPRIMSASTLETMDRTLLGDSK LDEARRGRIVEGFRRVAALSGRGEAGYTLNFREGGPLGPNAFALPDGTLILTDELVDLAGEDTEMIVGVLAHEIGHVEHE HSLRQIYRAAGLTALIMLVAGDIGSGAEDVLVQGGGLLALSYSRSAEAEADRHSVELMLKAGLDPGGLGRFFQLLETKLD DRSETSILSTHPGTPERRKAIADWIGKARKRLE
Sequences:
>Translated_353_residues MASDGPAIASGEWYPPGSGRSIIASLAERGGRLIVRDESGGELAGSMLPSIEISSRVGRVARRITFPDGSTFETAENDAI DRFLAGKGRVREGIVHRLERFHPRLIAFVAATILLGVLIYRFALPLMVEVAVAFTPPVVPRIMSASTLETMDRTLLGDSK LDEARRGRIVEGFRRVAALSGRGEAGYTLNFREGGPLGPNAFALPDGTLILTDELVDLAGEDTEMIVGVLAHEIGHVEHE HSLRQIYRAAGLTALIMLVAGDIGSGAEDVLVQGGGLLALSYSRSAEAEADRHSVELMLKAGLDPGGLGRFFQLLETKLD DRSETSILSTHPGTPERRKAIADWIGKARKRLE >Mature_352_residues ASDGPAIASGEWYPPGSGRSIIASLAERGGRLIVRDESGGELAGSMLPSIEISSRVGRVARRITFPDGSTFETAENDAID RFLAGKGRVREGIVHRLERFHPRLIAFVAATILLGVLIYRFALPLMVEVAVAFTPPVVPRIMSASTLETMDRTLLGDSKL DEARRGRIVEGFRRVAALSGRGEAGYTLNFREGGPLGPNAFALPDGTLILTDELVDLAGEDTEMIVGVLAHEIGHVEHEH SLRQIYRAAGLTALIMLVAGDIGSGAEDVLVQGGGLLALSYSRSAEAEADRHSVELMLKAGLDPGGLGRFFQLLETKLDD RSETSILSTHPGTPERRKAIADWIGKARKRLE
Specific function: Seems to regulate the expression of speB [H]
COG id: COG0501
COG function: function code O; Zn-dependent protease with chaperone function
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M48B family [H]
Homologues:
Organism=Escherichia coli, GI87082185, Length=248, Percent_Identity=26.6129032258064, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI87081800, Length=179, Percent_Identity=29.0502793296089, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001915 [H]
Pfam domain/function: PF01435 Peptidase_M48 [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 37924; Mature: 37793
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASDGPAIASGEWYPPGSGRSIIASLAERGGRLIVRDESGGELAGSMLPSIEISSRVGRV CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHH ARRITFPDGSTFETAENDAIDRFLAGKGRVREGIVHRLERFHPRLIAFVAATILLGVLIY HHHEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFALPLMVEVAVAFTPPVVPRIMSASTLETMDRTLLGDSKLDEARRGRIVEGFRRVAALS HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHC GRGEAGYTLNFREGGPLGPNAFALPDGTLILTDELVDLAGEDTEMIVGVLAHEIGHVEHE CCCCCCEEEEECCCCCCCCCCEECCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHCHHHH HSLRQIYRAAGLTALIMLVAGDIGSGAEDVLVQGGGLLALSYSRSAEAEADRHSVELMLK HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHC AGLDPGGLGRFFQLLETKLDDRSETSILSTHPGTPERRKAIADWIGKARKRLE CCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ASDGPAIASGEWYPPGSGRSIIASLAERGGRLIVRDESGGELAGSMLPSIEISSRVGRV CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHH ARRITFPDGSTFETAENDAIDRFLAGKGRVREGIVHRLERFHPRLIAFVAATILLGVLIY HHHEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFALPLMVEVAVAFTPPVVPRIMSASTLETMDRTLLGDSKLDEARRGRIVEGFRRVAALS HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHC GRGEAGYTLNFREGGPLGPNAFALPDGTLILTDELVDLAGEDTEMIVGVLAHEIGHVEHE CCCCCCEEEEECCCCCCCCCCEECCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHCHHHH HSLRQIYRAAGLTALIMLVAGDIGSGAEDVLVQGGGLLALSYSRSAEAEADRHSVELMLK HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHC AGLDPGGLGRFFQLLETKLDDRSETSILSTHPGTPERRKAIADWIGKARKRLE CCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2153656; 9278503; 1310091 [H]