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The map label for this gene is rirA [H]

Identifier: 150395554

GI number: 150395554

Start: 358069

End: 358533

Strand: Direct

Name: rirA [H]

Synonym: Smed_0328

Alternate gene names: 150395554

Gene position: 358069-358533 (Clockwise)

Preceding gene: 150395552

Following gene: 150395555

Centisome position: 9.47

GC content: 62.37

Gene sequence:

>465_bases
ATGCGTCTGACGAAGCAAACCAACTACGCAGTACGCATGTTGATGTACTGTGCTGCGAACGGCCAGAAGCTCAGCCGCAT
TCCTGAGATCGCGCGGGCTTACGGCGTTTCGGAGCTGTTCCTTTTCAAAATTCTGCAGCCGCTGACAAGAGCCGGCCTGG
TCGAGACCGTGCGCGGCCGTAACGGCGGCGTCCGCTTGCCGAGGCCGGCGGCGGAGATCACCCTTTTCGACGTCGTGAAG
GTGACGGAAGACAGTTTCGCCATGGCGGAATGCTTCGAGGCGGGCGAGATCGACTGCCCGCTGGTGGATAGCTGCGGCCT
CAATGCCGCGCTGCGCAAGGCGCTGAACGCCTTTTTCGAAGTGCTTCAGGGCTACACGATCGACGACCTGGTCAAGGCAC
GGCCGCAGATCAACTTCCTGCTCGGACTGGAAGAGCCCACGCGGCCGCAGACGTCGGCCGCCTGA

Upstream 100 bases:

>100_bases
AAGAGATAAGCTTCGCGAAATTTTCCACTTTTTGGAATTGTTCCAAACTACGATCCGTCCTATATGATGAGTCACGAATT
CATCGAATCCGGAGTAAAAA

Downstream 100 bases:

>100_bases
TTTTCGGCATTTGGTAAACAAGGCGGGATGGGCGGTTTTCCGCCCATCCCGCTTTGTTTTGTTTGAGCGGCCGGGATGAT
GCGAGGCCATCGGCCCTGAG

Product: iron-responsive transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGRNGGVRLPRPAAEITLFDVVK
VTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFEVLQGYTIDDLVKARPQINFLLGLEEPTRPQTSAA

Sequences:

>Translated_154_residues
MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGRNGGVRLPRPAAEITLFDVVK
VTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFEVLQGYTIDDLVKARPQINFLLGLEEPTRPQTSAA
>Mature_154_residues
MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGRNGGVRLPRPAAEITLFDVVK
VTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFEVLQGYTIDDLVKARPQINFLLGLEEPTRPQTSAA

Specific function: Required for growth utilizing PHB cycle intermediates [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=145, Percent_Identity=38.6206896551724, Blast_Score=93, Evalue=7e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 16998; Mature: 16998

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
NGGVRLPRPAAEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE
CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLQGYTIDDLVKARPQINFLLGLEEPTRPQTSAA
HHCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
NGGVRLPRPAAEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE
CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLQGYTIDDLVKARPQINFLLGLEEPTRPQTSAA
HHCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10735852; 11481430 [H]