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The map label for this gene is yafC [C]

Identifier: 150395533

GI number: 150395533

Start: 329484

End: 330359

Strand: Direct

Name: yafC [C]

Synonym: Smed_0306

Alternate gene names: 150395533

Gene position: 329484-330359 (Clockwise)

Preceding gene: 150395532

Following gene: 150395536

Centisome position: 8.71

GC content: 65.98

Gene sequence:

>876_bases
ATGAAAAACCCGGATTGGGATATTTACCGCTGCTTCGTCACGGTAGCGCGTAGCGGCGGCCTGACCGGGGCGGCGCAGGC
GACGGGTCTTAGTCCGGCCACGGTCGGCCGCCGCATGCTGGAGCTGGAGGAGCGCATGGGGCGCTCGCTCTTCATCCGCA
GCCAAACCGGCTATGTGCTGACCGGCGACGGCCGCTTCCTCTTCGAGCAGTTGCAGGAGATGGAGGCGGCGGCCCGCAAG
GTCGAAAGCTGGCAGAAAGAGGGGGAGGGGGCGACGGTCGTCCGCATCGCGGCCGGCACCTGGGTCTCCTGGCTGATTGC
CGAGAACTTCCCGGCGATCTGCACGGAACGGGACGCATTCGGCATTTCGCTGACGATCGGCGAGACGCGCGCCAATCTCG
CCTATCGCGAAAGCGATATCGGCATTCGCGCCTTCGAGCCTGAAGAGACCTATCTCGCCGCGCGGCCGGTCGGCGAAGTC
GCCTATGCCGCCTACCGGCAGAAGAACGCGCCAGGCGGAGAGGAGCGCTGGGTTGCAATCGACGAAGAGGACGCGATATC
GGCCTATCTGAGATGGCCGCATGAGCACGCTGCGGGGCGCATCGTCGCGGCCGTCACCCGTCCTCGCTCGCTTCTGGATC
TCGCGCGATCCGGCGCCGGGCGGGCGGTGCTCCCCTGTTTCGTCGGTGATCTCGATCCGTTGCTCGAACGGGTGGGGGAT
GAGATAGAGCCGCTCAGGCACCGGCAGTGGATCGTCATGAACAACGAGGATCGCCACAGGCGGGATATCCGTACCGTGGT
CGACCGCATGACACGCCTCCTGCGCAGCCACACGGATCTATTCGCCGGCAAGCGGCCGCGGCGCAATTCGGTTTGA

Upstream 100 bases:

>100_bases
ATCATGTCCATGGTGATGCTCCTTCATGTTCGGGCATCCCCTTTTTTATGCATCCGAGATTGATTTACATACAGCCAATT
ACCTCATATGTTTTTCAGCT

Downstream 100 bases:

>100_bases
GCCTCCAACCGGGCTGCGGGCCGAAAGCCGCACGCGTTCCTCATGCCGCTTCAGGCCGGCCGATCCTTGTCTCATCTGCT
TCGGTCTCGTGCGGCGCGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; HTH-Type Transcriptional Regulator; LysR Family Transcriptional Activator; Lysr-Family Transcriptional Regulator; HTH Transcription Regulator Protein; Transcriptional Regulator Protein; Transcriptonal Regulator LysR Family; Transcriptional Regulator Of LysR Family; Transcriptional Regulator Protein LysR Family

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKNPDWDIYRCFVTVARSGGLTGAAQATGLSPATVGRRMLELEERMGRSLFIRSQTGYVLTGDGRFLFEQLQEMEAAARK
VESWQKEGEGATVVRIAAGTWVSWLIAENFPAICTERDAFGISLTIGETRANLAYRESDIGIRAFEPEETYLAARPVGEV
AYAAYRQKNAPGGEERWVAIDEEDAISAYLRWPHEHAAGRIVAAVTRPRSLLDLARSGAGRAVLPCFVGDLDPLLERVGD
EIEPLRHRQWIVMNNEDRHRRDIRTVVDRMTRLLRSHTDLFAGKRPRRNSV

Sequences:

>Translated_291_residues
MKNPDWDIYRCFVTVARSGGLTGAAQATGLSPATVGRRMLELEERMGRSLFIRSQTGYVLTGDGRFLFEQLQEMEAAARK
VESWQKEGEGATVVRIAAGTWVSWLIAENFPAICTERDAFGISLTIGETRANLAYRESDIGIRAFEPEETYLAARPVGEV
AYAAYRQKNAPGGEERWVAIDEEDAISAYLRWPHEHAAGRIVAAVTRPRSLLDLARSGAGRAVLPCFVGDLDPLLERVGD
EIEPLRHRQWIVMNNEDRHRRDIRTVVDRMTRLLRSHTDLFAGKRPRRNSV
>Mature_291_residues
MKNPDWDIYRCFVTVARSGGLTGAAQATGLSPATVGRRMLELEERMGRSLFIRSQTGYVLTGDGRFLFEQLQEMEAAARK
VESWQKEGEGATVVRIAAGTWVSWLIAENFPAICTERDAFGISLTIGETRANLAYRESDIGIRAFEPEETYLAARPVGEV
AYAAYRQKNAPGGEERWVAIDEEDAISAYLRWPHEHAAGRIVAAVTRPRSLLDLARSGAGRAVLPCFVGDLDPLLERVGD
EIEPLRHRQWIVMNNEDRHRRDIRTVVDRMTRLLRSHTDLFAGKRPRRNSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32710; Mature: 32710

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPDWDIYRCFVTVARSGGLTGAAQATGLSPATVGRRMLELEERMGRSLFIRSQTGYVL
CCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEE
TGDGRFLFEQLQEMEAAARKVESWQKEGEGATVVRIAAGTWVSWLIAENFPAICTERDAF
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEEECCCCC
GISLTIGETRANLAYRESDIGIRAFEPEETYLAARPVGEVAYAAYRQKNAPGGEERWVAI
EEEEEECCCCCCCEEEECCCCEEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCEEEE
DEEDAISAYLRWPHEHAAGRIVAAVTRPRSLLDLARSGAGRAVLPCFVGDLDPLLERVGD
CCHHHHHHHHCCCCHHHCCEEEEEECCCHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHCC
EIEPLRHRQWIVMNNEDRHRRDIRTVVDRMTRLLRSHTDLFAGKRPRRNSV
HHCHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKNPDWDIYRCFVTVARSGGLTGAAQATGLSPATVGRRMLELEERMGRSLFIRSQTGYVL
CCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEE
TGDGRFLFEQLQEMEAAARKVESWQKEGEGATVVRIAAGTWVSWLIAENFPAICTERDAF
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEEECCCCC
GISLTIGETRANLAYRESDIGIRAFEPEETYLAARPVGEVAYAAYRQKNAPGGEERWVAI
EEEEEECCCCCCCEEEECCCCEEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCEEEE
DEEDAISAYLRWPHEHAAGRIVAAVTRPRSLLDLARSGAGRAVLPCFVGDLDPLLERVGD
CCHHHHHHHHCCCCHHHCCEEEEEECCCHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHCC
EIEPLRHRQWIVMNNEDRHRRDIRTVVDRMTRLLRSHTDLFAGKRPRRNSV
HHCHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA