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The map label for this gene is fliR [H]

Identifier: 150395511

GI number: 150395511

Start: 303801

End: 304553

Strand: Direct

Name: fliR [H]

Synonym: Smed_0284

Alternate gene names: 150395511

Gene position: 303801-304553 (Clockwise)

Preceding gene: 150395510

Following gene: 150395512

Centisome position: 8.03

GC content: 59.76

Gene sequence:

>753_bases
ATGATCACCGATCCCGAGGGTACGGTGCTGGCGCTGTTTGCGGCCTTCTGCCGGATCGGCGGCTGCATCATGATCATGCC
CGGCTTCTCGACCGCACGCGTCCCGATGCAGATCAGGCTGTTCGTGGCAGTGGCGATCTCCATGGCCATCCTGCCGGTCA
TGTGGACGGACATCTATCCGCAGGTGACGGGCAAAGGTCACGATTATCTCTACCTGGTCGCGACCGAGACCGCGGTCGGC
GCCGTGATAGGGCTCGTCGCGCGATATTATGTGCTTGGCCTGCAGTTTGCCGGAACCGCGATGACGATGATGATGGGGTT
CAGCCCGCCGCCGACGGCGGATGTGCTGGAGGATACCGCGGAGAACCAGCTCACCAGCCTGATCAGTTTCGCCGGATTGA
TGATTCTCTTCATGCTGGATTTCCATCACGTGATCTTCGAGGCCATCGCACAGTCCTATAGAGTGATGCCTATAGGCGCG
GGTTTCGACCCGCAGGGAATGCTGATCACGCTGACCAACTCGCTCGAACAGACCTTCATGATCATGCTCAGGCTCGCCAG
CCCCTTGGTGATTTACGGCCTTCTGTTCAACGTCGCGATCGGCATGGTGAACAAGCTGGCGCCGCAGATCCCGGTCTACT
TCATATCGCAGCCCTATCTTATCATGGGCGGCCTGTTCCTCCTCTATCTCGGCATCGCGGCGATGCTGCGCCTCTTTGCG
GACGGTTTCGCTCCCGTCATGCAGGGTGGCTAG

Upstream 100 bases:

>100_bases
ATGTGCGCATGATCATCGAACGCCTCTTCGCCACATTGCCCGTGCTCTCGCATGTCGAACTCGCCAAGGGGCTCGAGATC
AAGATCATCGGCTCGATTTC

Downstream 100 bases:

>100_bases
CTCCATGAAGGCTCGGTCGGAGAAGCTGAAACGCCTGGTCGCCGTTCAGCGGCACCTGGAGCGGATGGCGGAAAGCGAAG
TAGCGGAGACCGCCCGGCAG

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYPQVTGKGHDYLYLVATETAVG
AVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTAENQLTSLISFAGLMILFMLDFHHVIFEAIAQSYRVMPIGA
GFDPQGMLITLTNSLEQTFMIMLRLASPLVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA
DGFAPVMQGG

Sequences:

>Translated_250_residues
MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYPQVTGKGHDYLYLVATETAVG
AVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTAENQLTSLISFAGLMILFMLDFHHVIFEAIAQSYRVMPIGA
GFDPQGMLITLTNSLEQTFMIMLRLASPLVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA
DGFAPVMQGG
>Mature_250_residues
MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYPQVTGKGHDYLYLVATETAVG
AVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTAENQLTSLISFAGLMILFMLDFHHVIFEAIAQSYRVMPIGA
GFDPQGMLITLTNSLEQTFMIMLRLASPLVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA
DGFAPVMQGG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27161; Mature: 27161

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
8.0 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
8.0 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYP
CCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
QVTGKGHDYLYLVATETAVGAVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTA
CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ENQLTSLISFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGMLITLTNSLEQTFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEHHHHHHHHH
IMLRLASPLVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHH
DGFAPVMQGG
CCCCHHHCCC
>Mature Secondary Structure
MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYP
CCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
QVTGKGHDYLYLVATETAVGAVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTA
CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ENQLTSLISFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGMLITLTNSLEQTFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEHHHHHHHHH
IMLRLASPLVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHH
DGFAPVMQGG
CCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7814323; 11259647 [H]