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The map label for this gene is lsrB [H]

Identifier: 150395452

GI number: 150395452

Start: 249084

End: 250073

Strand: Direct

Name: lsrB [H]

Synonym: Smed_0225

Alternate gene names: 150395452

Gene position: 249084-250073 (Clockwise)

Preceding gene: 150395451

Following gene: 150395453

Centisome position: 6.59

GC content: 59.8

Gene sequence:

>990_bases
ATGAAAATACTGAAATCATTGATGGTGACGGCCGCCGTTACCGCGGCGCTGATGGCCAATGCAGCGCATGCGGAAAACAA
GAAGATAGCGCTTGTCGTCAAGGCACTGGGCATCGGCTTCTTCGAAGCCGCCAACAAGGGTGCGCAGGAGGCGGCGAAAG
AACTCGGTGACGTCGAGATCATCTATACCGGCCCAACCTCGACGACCGCGGAAGGCCAGATCGAAGTGATCAACTCGCTG
ATCGCTCAGAAAGTCGATGCCATCGCCGTGTCGGCCAACGACACCGACGCGCTCGTTCCGGCGCTGAAGAAGGCGATGGA
CCGCGGCATCAAGGTCATCTCCTGGGATTCGGGCGTGGCCAAGGAAGGCCGCATGATGCATCTCAACCCGTCATCAAGCC
CGCTGATCGGCAACATGATCATCAAGCTCGCTGCCGACAATCTGCCCGAGGGCGGCGATGTCGCGGTGCTTTCGGCCTCG
GCAACAGCGACCAACCAGAACACCTGGATCGCCGAAATGAAGAAGGTCCAGGGCAACTACAAGGGCATCAATGTGGTCGC
TACCGTCTATGGCGACGACCTAGCGGACAAGTCCTATCGCGAGACCCAGGGGCTCATCCAGTCCCATCCGAACCTGAAGG
CCATCATTGCCCCGACATCCGTCGGCATCGTCGCCGCGGCGCAGGCCGTGACCGACGCCGGCAAGATCGGTCAGATCAAC
GTCACGGGCCTCGGCCTTCCCTCGGAGATGGCAGGGCATGTGAAGTCCGGTGCCTCGAAATCCTTCGCCATCTGGAACCC
GATCGACCTCGGTTATTCGGCAACGATGATCGCCTATGAGCTCATCAACGGTGCCGAAGCCAAGCCCGGCGCGGAACTCA
AGATGGGCCGCATGGGAGCCGTCAAGCTCGACGAAAACAATGAAGGCGCCATGGCCGACCCGTTCGTCTATGATGCTTCG
AACGTCGAGGAATTCGCGAAGATCTTCTGA

Upstream 100 bases:

>100_bases
GGAGCTGATGTCCCGAGCTTCCGGATGAAGATCGGGAAATGATTGTTCGGGCAGGAAGACGCAGCCACTCCGGATGCGGG
CCCATGGGAGGAAGAAAACG

Downstream 100 bases:

>100_bases
TCGGCGGGGGGGGCGTTTGCCCCCTCATCCGGCCTGCCGGCCACCTTCCCGTTCTACGGGGAGAGGGACACAAGCGGCGC
CACCTGAACCCGCCGTCACC

Product: rhamnose ABC transporter periplasmic rhamnose-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKILKSLMVTAAVTAALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEIIYTGPTSTTAEGQIEVINSL
IAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVAKEGRMMHLNPSSSPLIGNMIIKLAADNLPEGGDVAVLSAS
ATATNQNTWIAEMKKVQGNYKGINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQIN
VTGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYELINGAEAKPGAELKMGRMGAVKLDENNEGAMADPFVYDAS
NVEEFAKIF

Sequences:

>Translated_329_residues
MKILKSLMVTAAVTAALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEIIYTGPTSTTAEGQIEVINSL
IAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVAKEGRMMHLNPSSSPLIGNMIIKLAADNLPEGGDVAVLSAS
ATATNQNTWIAEMKKVQGNYKGINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQIN
VTGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYELINGAEAKPGAELKMGRMGAVKLDENNEGAMADPFVYDAS
NVEEFAKIF
>Mature_329_residues
MKILKSLMVTAAVTAALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEIIYTGPTSTTAEGQIEVINSL
IAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVAKEGRMMHLNPSSSPLIGNMIIKLAADNLPEGGDVAVLSAS
ATATNQNTWIAEMKKVQGNYKGINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQIN
VTGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYELINGAEAKPGAELKMGRMGAVKLDENNEGAMADPFVYDAS
NVEEFAKIF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=308, Percent_Identity=34.4155844155844, Blast_Score=176, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34287; Mature: 34287

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILKSLMVTAAVTAALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEI
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHCCCCHHHHHHHHCCEEE
IYTGPTSTTAEGQIEVINSLIAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVA
EEECCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCC
KEGRMMHLNPSSSPLIGNMIIKLAADNLPEGGDVAVLSASATATNQNTWIAEMKKVQGNY
CCCEEEEECCCCCCHHHHHHHEEHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC
KGINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQIN
CCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEE
VTGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYELINGAEAKPGAELKMGRMGA
EEECCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCE
VKLDENNEGAMADPFVYDASNVEEFAKIF
EEECCCCCCCCCCCEEECCCCHHHHHHCC
>Mature Secondary Structure
MKILKSLMVTAAVTAALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEI
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHCCCCHHHHHHHHCCEEE
IYTGPTSTTAEGQIEVINSLIAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVA
EEECCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCC
KEGRMMHLNPSSSPLIGNMIIKLAADNLPEGGDVAVLSASATATNQNTWIAEMKKVQGNY
CCCEEEEECCCCCCHHHHHHHEEHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC
KGINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQIN
CCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEE
VTGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYELINGAEAKPGAELKMGRMGA
EEECCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCE
VKLDENNEGAMADPFVYDASNVEEFAKIF
EEECCCCCCCCCCCEEECCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA