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The map label for this gene is ulaR [H]

Identifier: 150395451

GI number: 150395451

Start: 248159

End: 248971

Strand: Direct

Name: ulaR [H]

Synonym: Smed_0224

Alternate gene names: 150395451

Gene position: 248159-248971 (Clockwise)

Preceding gene: 150395444

Following gene: 150395452

Centisome position: 6.56

GC content: 60.27

Gene sequence:

>813_bases
ATGCACGAGAAAGAAAGACATAGGATCATCCTGTCGGCCGTACAGGAAAAACCGGTCGCGACCGTGCCTGAACTCGTCGA
TCTCACCGGCAGCTCGGAGGCGACGATCCGCCGGGACATTGCGGCGCTGCATGTGCAGAAGCGCCTGCGACGCGTCAGGG
GCGGCGCCGAGGCGATCAACCCGCCGCAGTTCGTCGGCCTTGCCGGCCGGCCCTTCAGAGTGAACGAAGGTTTGCATGCG
CGGGAGAAACAGGCGATTGCCCGGGAAGCGGTGGCGCTTTGTCAGGACGGCGAACCGATCATCATCAATGGCGGCACGAC
GACATTTCAAATGGTTCATTTCCTCGCCAATCGCCGGATGCAGGTCTTCACCAATTCATTTCCGATCGCCGAACACCTGC
TCAAGCATTCCAAGAACACCGTCATGTTGTCGGGCGGGACGATCTATCGCGAGCAGAACATCATATTGAGCCCTTTCGAA
AATGACGTGACGCGCAACTTCTATGCGCGGCGCATGTTCATGGGGGCGCAGGGGCTCGGGCCTCTCGGGCTGATGGAAGC
AGATCCCCTGCTGATCCAGGCCGAGCAGAAGCTTATCGACCAGGCCGACGATCTCGTCGTGCTCGTCGACTCCTCGAAGT
TTCACAGGCGCTCGAGTCTCATTCTGTGTGGCCTCAAGCGCATCGCCACCGTCATCACGGACGCGGGCATCGAGGACCGT
CATGCCTCGATGCTTGAAAATGCCGGCGTCAGCCTGATCGTCGCCGCTCAGAGCGCTAGGGCCGATGCCGAAAAGGCTTC
GACATCCGCATGA

Upstream 100 bases:

>100_bases
TCAAAAACCCTCATGATGCACCGCACAATGAAAAAACATGATTGTTTGTGATTGACAATGCTCGGGAGTGATGGAAGCAT
GCGGAGCATCGGAGGAGCGC

Downstream 100 bases:

>100_bases
GGAATGGGCGGAGGAGCTGATGTCCCGAGCTTCCGGATGAAGATCGGGAAATGATTGTTCGGGCAGGAAGACGCAGCCAC
TCCGGATGCGGGCCCATGGG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAINPPQFVGLAGRPFRVNEGLHA
REKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRRMQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFE
NDVTRNFYARRMFMGAQGLGPLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDAGIEDR
HASMLENAGVSLIVAAQSARADAEKASTSA

Sequences:

>Translated_270_residues
MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAINPPQFVGLAGRPFRVNEGLHA
REKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRRMQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFE
NDVTRNFYARRMFMGAQGLGPLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDAGIEDR
HASMLENAGVSLIVAAQSARADAEKASTSA
>Mature_270_residues
MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAINPPQFVGLAGRPFRVNEGLHA
REKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRRMQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFE
NDVTRNFYARRMFMGAQGLGPLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDAGIEDR
HASMLENAGVSLIVAAQSARADAEKASTSA

Specific function: Represses ulaG and the ulaABCDEF operon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790635, Length=257, Percent_Identity=33.852140077821, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789059, Length=260, Percent_Identity=26.5384615384615, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI226510968, Length=253, Percent_Identity=28.0632411067194, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789170, Length=204, Percent_Identity=27.9411764705882, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789519, Length=258, Percent_Identity=25.5813953488372, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789829, Length=237, Percent_Identity=26.5822784810127, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787540, Length=250, Percent_Identity=26.4, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082344, Length=256, Percent_Identity=25, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788069, Length=236, Percent_Identity=26.6949152542373, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790753, Length=237, Percent_Identity=23.6286919831224, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29691; Mature: 29691

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAIN
CCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PPQFVGLAGRPFRVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRRM
CCCEECCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCE
QVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFENDVTRNFYARRMFMGAQGLG
EEHCCCCCHHHHHHHCCCCEEEEECCEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCC
PLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDAGIEDR
CCCCCCCCCCEEEHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
HASMLENAGVSLIVAAQSARADAEKASTSA
HHHHHHHCCCEEEEEECCHHCHHHHHCCCC
>Mature Secondary Structure
MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAIN
CCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PPQFVGLAGRPFRVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRRM
CCCEECCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCE
QVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFENDVTRNFYARRMFMGAQGLG
EEHCCCCCHHHHHHHCCCCEEEEECCEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCC
PLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDAGIEDR
CCCCCCCCCCEEEHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
HASMLENAGVSLIVAAQSARADAEKASTSA
HHHHHHHCCCEEEEEECCHHCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA