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The map label for this gene is ydfH [C]

Identifier: 150395411

GI number: 150395411

Start: 203535

End: 204221

Strand: Direct

Name: ydfH [C]

Synonym: Smed_0184

Alternate gene names: 150395411

Gene position: 203535-204221 (Clockwise)

Preceding gene: 150395409

Following gene: 150395412

Centisome position: 5.38

GC content: 66.08

Gene sequence:

>687_bases
ATGACGTATTTTTCTGCCCCCTCGAGGACCCGCAATGCGGCCCGCCCCGCCAAGGCCACCGCTGCCTTCAATGCGCTGAA
GCGTGACATCATGCTGGGCGTGCTTCCGGCGGGAGCGGCGCTGACCGAGCTGGATCTGGCGGCGCATTTCTCTTGCAGCC
AAGGCACGGTGCGCGAGGCGCTGCTGCAATTGCAGGAGGAGGGCCTGGTGCGGCGGCAGGGGCATCGCGGTACGCAGGTC
TCCGAATGCACCGAGGCGGAGGCCGTGGAAATGTTCCGCGTGCGCCTGCACGTCGAGTGCAGCGGCATCGTCCGGACGCT
CCAGGCGCCGAGCCGCACGCTGGCTGCCGATCTTCAGGCGCTACTTGCGAAAATGCTCGATGCTGCGAAGGCCGGGGACG
AGTTGGAGCTTGCATCCTTCGACCGGGACTTCCACCGGCGCATCTTCCAGGATGCCCGGCTTCCGGCGCTCGATCCGATC
CTGCATCGTTGCCTCGTCCACAATCACCGTTTCAAGATCTCGCGAAGCATCACCCCGCGCGATCTCGTGGCGACTGCGCA
GCGGCACGGCGCCATCATCGAGGCGATCGAAAGCGGCGATGTCGCGAAGGCCGGCGCAGCCCTGCGCCATCACATCGCGA
CGATCGTTGATCTGGGCCCCGACGTCTTCCCGGATGCGACCCAATGA

Upstream 100 bases:

>100_bases
CACGGTTTTCCCTCCAAGGTCATCTCTACCCTTGACCTCCATTATCGATATCAATATCAATAATGGCAGCAATTTTGATT
GGCAACTCCGCGAGCCCGCG

Downstream 100 bases:

>100_bases
GCGCGGCGCCGGACCTGTCGCGGCTGTCGCCGGAAATGGCGGCGCTGCTCCTGCGCGTGGCTGCCGAAACGGGGCCGCAG
GTCGATCCCACGACCTTGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR-Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator Protein; Regulator PutR For Proline Utilization GntR Family; Transcriptional Regulator GntR Family Protein

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTYFSAPSRTRNAARPAKATAAFNALKRDIMLGVLPAGAALTELDLAAHFSCSQGTVREALLQLQEEGLVRRQGHRGTQV
SECTEAEAVEMFRVRLHVECSGIVRTLQAPSRTLAADLQALLAKMLDAAKAGDELELASFDRDFHRRIFQDARLPALDPI
LHRCLVHNHRFKISRSITPRDLVATAQRHGAIIEAIESGDVAKAGAALRHHIATIVDLGPDVFPDATQ

Sequences:

>Translated_228_residues
MTYFSAPSRTRNAARPAKATAAFNALKRDIMLGVLPAGAALTELDLAAHFSCSQGTVREALLQLQEEGLVRRQGHRGTQV
SECTEAEAVEMFRVRLHVECSGIVRTLQAPSRTLAADLQALLAKMLDAAKAGDELELASFDRDFHRRIFQDARLPALDPI
LHRCLVHNHRFKISRSITPRDLVATAQRHGAIIEAIESGDVAKAGAALRHHIATIVDLGPDVFPDATQ
>Mature_227_residues
TYFSAPSRTRNAARPAKATAAFNALKRDIMLGVLPAGAALTELDLAAHFSCSQGTVREALLQLQEEGLVRRQGHRGTQVS
ECTEAEAVEMFRVRLHVECSGIVRTLQAPSRTLAADLQALLAKMLDAAKAGDELELASFDRDFHRRIFQDARLPALDPIL
HRCLVHNHRFKISRSITPRDLVATAQRHGAIIEAIESGDVAKAGAALRHHIATIVDLGPDVFPDATQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24870; Mature: 24739

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYFSAPSRTRNAARPAKATAAFNALKRDIMLGVLPAGAALTELDLAAHFSCSQGTVREA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHH
LLQLQEEGLVRRQGHRGTQVSECTEAEAVEMFRVRLHVECSGIVRTLQAPSRTLAADLQA
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCHHHHHHHHHH
LLAKMLDAAKAGDELELASFDRDFHRRIFQDARLPALDPILHRCLVHNHRFKISRSITPR
HHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCHH
DLVATAQRHGAIIEAIESGDVAKAGAALRHHIATIVDLGPDVFPDATQ
HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TYFSAPSRTRNAARPAKATAAFNALKRDIMLGVLPAGAALTELDLAAHFSCSQGTVREA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHH
LLQLQEEGLVRRQGHRGTQVSECTEAEAVEMFRVRLHVECSGIVRTLQAPSRTLAADLQA
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCHHHHHHHHHH
LLAKMLDAAKAGDELELASFDRDFHRRIFQDARLPALDPILHRCLVHNHRFKISRSITPR
HHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCHH
DLVATAQRHGAIIEAIESGDVAKAGAALRHHIATIVDLGPDVFPDATQ
HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA