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The map label for this gene is ychF [C]

Identifier: 150401872

GI number: 150401872

Start: 1507906

End: 1509087

Strand: Reverse

Name: ychF [C]

Synonym: Maeo_1450

Alternate gene names: 150401872

Gene position: 1509087-1507906 (Counterclockwise)

Preceding gene: 150401875

Following gene: 150401867

Centisome position: 96.15

GC content: 31.9

Gene sequence:

>1182_bases
ATGGCAATATTAGGAATTGTAGGAAAACCGAATGTAGGAAAAAGCACTTTATTTAATGCTATGACCGAAAAAGTAGCAGA
CATTGGAAATTATCCATTCACAACAATAAACCCAAATGTAGGAACATCATTTGTAAGTTCAGAATGCCCTTGCGTTGAAT
TAGATATTCAGTGCAACCCAAATAATTCAAAATGTATTGATGGAACAAGATATGTCCCAGTTGAAATAATTGATGTAGCT
GGTTTGGTTCCAGAGGCACATAAAGGAAAAGGTATGGGAAATAAATTTTTAGACGATTTAAGGCAGGCTGATGCCTTTAT
AGTGGTGGTTGATGCAAGTGGAACAACGGATATAGAAGGAAATCCAGCAGAAAATCACGACCCCACCGAAGATGTAAAAT
TTTTGTTAAATGAAATAGATATGTGGATTTACGGAATAATTACAAAAAACTGGGATAAATTATCGAGAAAAGCCCAACAG
CAGAAAAATACGGCAAAGATAATATCAGAACAATTAAGTGGATTGAATATTACCGAAGACCATGTTCATAATTCAACTAG
AAATATGGACGAAAGCCCCATTAAATGGACAGAGGAAGACCTTTTAACGCTATCCCAAACCCTTAGAAAAATTTCAAAAC
CAATGTTAATTTGTGCCAATAAGGCAGACCATCCAAATGCTGAAAACAACATAAAAAAATTAAAAGAAGAATTTAAAGAT
TATATTGTAATACCTACCTCCGCAGAAATAGAATTAACCTTAAAAAGAGCAGAAGCAGGAAATATAATAAAATATGATAG
AGCTAACAATGATTTTGAGATAATAAATGATTCATTAAATGATGCCCAAAAAAATGCTTTAAATTATATTAAAGAATATT
TAAAAAAGAATAATGGGACAGGTGTGAGAGATTTATTGAATAATGCTTATTTTGAATTATTAAATATGATTGTGGTTTAT
CCTGTGGAGGACGAAAACAAATATTGCGATAAAAAAGGAAATGTTCTCCCAGATGCTCATTTAGTTAAAAAAGGCACAAC
TGCAAAACAGTTGGCATATAAAATACATACAGACATAGGAGATAAATTCATATATGCCGTAGATGCAAAGAAAAAAATAA
GAATTGGAGCCGACCAAGAATTAAAAGAAAAAGATGTAATAAAAATAGTATCAGCGGCATAA

Upstream 100 bases:

>100_bases
TCAGGCGATTTGAATATTTTCACTATCTAAAATTTCCTACGGGAATTTTACGAAATTAAAACTCGAAGAGTTTTAATTAA
AAAAGAAAAAAGGCGAAAAT

Downstream 100 bases:

>100_bases
TTATTATTATATAATTTATATATGGGAGGGGAGCTCCCAAAATATTTTTTATTATTTATTTTTTTGAAAATCTTCTATAT
AAACAGGTTGGATAACCAGT

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MAILGIVGKPNVGKSTLFNAMTEKVADIGNYPFTTINPNVGTSFVSSECPCVELDIQCNPNNSKCIDGTRYVPVEIIDVA
GLVPEAHKGKGMGNKFLDDLRQADAFIVVVDASGTTDIEGNPAENHDPTEDVKFLLNEIDMWIYGIITKNWDKLSRKAQQ
QKNTAKIISEQLSGLNITEDHVHNSTRNMDESPIKWTEEDLLTLSQTLRKISKPMLICANKADHPNAENNIKKLKEEFKD
YIVIPTSAEIELTLKRAEAGNIIKYDRANNDFEIINDSLNDAQKNALNYIKEYLKKNNGTGVRDLLNNAYFELLNMIVVY
PVEDENKYCDKKGNVLPDAHLVKKGTTAKQLAYKIHTDIGDKFIYAVDAKKKIRIGADQELKEKDVIKIVSAA

Sequences:

>Translated_393_residues
MAILGIVGKPNVGKSTLFNAMTEKVADIGNYPFTTINPNVGTSFVSSECPCVELDIQCNPNNSKCIDGTRYVPVEIIDVA
GLVPEAHKGKGMGNKFLDDLRQADAFIVVVDASGTTDIEGNPAENHDPTEDVKFLLNEIDMWIYGIITKNWDKLSRKAQQ
QKNTAKIISEQLSGLNITEDHVHNSTRNMDESPIKWTEEDLLTLSQTLRKISKPMLICANKADHPNAENNIKKLKEEFKD
YIVIPTSAEIELTLKRAEAGNIIKYDRANNDFEIINDSLNDAQKNALNYIKEYLKKNNGTGVRDLLNNAYFELLNMIVVY
PVEDENKYCDKKGNVLPDAHLVKKGTTAKQLAYKIHTDIGDKFIYAVDAKKKIRIGADQELKEKDVIKIVSAA
>Mature_392_residues
AILGIVGKPNVGKSTLFNAMTEKVADIGNYPFTTINPNVGTSFVSSECPCVELDIQCNPNNSKCIDGTRYVPVEIIDVAG
LVPEAHKGKGMGNKFLDDLRQADAFIVVVDASGTTDIEGNPAENHDPTEDVKFLLNEIDMWIYGIITKNWDKLSRKAQQQ
KNTAKIISEQLSGLNITEDHVHNSTRNMDESPIKWTEEDLLTLSQTLRKISKPMLICANKADHPNAENNIKKLKEEFKDY
IVIPTSAEIELTLKRAEAGNIIKYDRANNDFEIINDSLNDAQKNALNYIKEYLKKNNGTGVRDLLNNAYFELLNMIVVYP
VEDENKYCDKKGNVLPDAHLVKKGTTAKQLAYKIHTDIGDKFIYAVDAKKKIRIGADQELKEKDVIKIVSAA

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=380, Percent_Identity=27.3684210526316, Blast_Score=96, Evalue=8e-20,
Organism=Escherichia coli, GI1787454, Length=375, Percent_Identity=26.4, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789574, Length=179, Percent_Identity=25.6983240223464, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17509631, Length=372, Percent_Identity=25.2688172043011, Blast_Score=81, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321649, Length=386, Percent_Identity=34.7150259067358, Blast_Score=229, Evalue=5e-61,
Organism=Saccharomyces cerevisiae, GI6321773, Length=388, Percent_Identity=27.8350515463918, Blast_Score=94, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6319499, Length=264, Percent_Identity=26.5151515151515, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640873, Length=373, Percent_Identity=28.4182305630027, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24640877, Length=373, Percent_Identity=28.4182305630027, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24640875, Length=373, Percent_Identity=28.4182305630027, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI20129375, Length=113, Percent_Identity=36.283185840708, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 43887; Mature: 43756

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILGIVGKPNVGKSTLFNAMTEKVADIGNYPFTTINPNVGTSFVSSECPCVELDIQCNP
CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHCCCCCEEEEEEEECC
NNSKCIDGTRYVPVEIIDVAGLVPEAHKGKGMGNKFLDDLRQADAFIVVVDASGTTDIEG
CCCCCCCCCEECCEEEEEHHCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCC
NPAENHDPTEDVKFLLNEIDMWIYGIITKNWDKLSRKAQQQKNTAKIISEQLSGLNITED
CCCCCCCCHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
HVHNSTRNMDESPIKWTEEDLLTLSQTLRKISKPMLICANKADHPNAENNIKKLKEEFKD
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHC
YIVIPTSAEIELTLKRAEAGNIIKYDRANNDFEIINDSLNDAQKNALNYIKEYLKKNNGT
EEEECCCCEEEEEEEECCCCCEEEECCCCCCHHEECCHHHHHHHHHHHHHHHHHHCCCCC
GVRDLLNNAYFELLNMIVVYPVEDENKYCDKKGNVLPDAHLVKKGTTAKQLAYKIHTDIG
CHHHHHHHHHHHHHHEEEEEEECCCCCHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCC
DKFIYAVDAKKKIRIGADQELKEKDVIKIVSAA
CEEEEEECCCCEEEECCCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
AILGIVGKPNVGKSTLFNAMTEKVADIGNYPFTTINPNVGTSFVSSECPCVELDIQCNP
EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHCCCCCEEEEEEEECC
NNSKCIDGTRYVPVEIIDVAGLVPEAHKGKGMGNKFLDDLRQADAFIVVVDASGTTDIEG
CCCCCCCCCEECCEEEEEHHCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCC
NPAENHDPTEDVKFLLNEIDMWIYGIITKNWDKLSRKAQQQKNTAKIISEQLSGLNITED
CCCCCCCCHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
HVHNSTRNMDESPIKWTEEDLLTLSQTLRKISKPMLICANKADHPNAENNIKKLKEEFKD
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHC
YIVIPTSAEIELTLKRAEAGNIIKYDRANNDFEIINDSLNDAQKNALNYIKEYLKKNNGT
EEEECCCCEEEEEEEECCCCCEEEECCCCCCHHEECCHHHHHHHHHHHHHHHHHHCCCCC
GVRDLLNNAYFELLNMIVVYPVEDENKYCDKKGNVLPDAHLVKKGTTAKQLAYKIHTDIG
CHHHHHHHHHHHHHHEEEEEEECCCCCHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCC
DKFIYAVDAKKKIRIGADQELKEKDVIKIVSAA
CEEEEEECCCCEEEECCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]