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The map label for this gene is pdxS

Identifier: 150401738

GI number: 150401738

Start: 1378932

End: 1379831

Strand: Reverse

Name: pdxS

Synonym: Maeo_1316

Alternate gene names: 150401738

Gene position: 1379831-1378932 (Counterclockwise)

Preceding gene: 150401739

Following gene: 150401737

Centisome position: 87.92

GC content: 38.11

Gene sequence:

>900_bases
ATGAAAAAAATTGGAACAGAATTATTAAAAAGAGGATTTGCAAAAATGGTAAAACATGGTGTTGTAATGGATGTTACAAA
TCCAGAACAAGCAAGAATAGCAGAAGATGCAGGGGCAGCAGCTGTAATGGCTTTGGAAAGAGTTCCAGCCGATATTAGAG
CAGAAGGCGGAGTTTCAAGAATGTCCGACCCTGAAATGATTTTAGAAATAAAAGACGAAGTTTCAATTCCAGTTATGGCA
AAGGCTAGAATTGGTCATTTTGTTGAAGCTCAGGCATTAGAATCCCTTGGTATAGATATGGTTGATGAAAGTGAGGTATT
AACACCAGCTGACGAAATTCACCATATAGACAAAAATGCTTTTGATATTCCATTTGTATGCGGTGCAAGAAATCTCGGAG
AAGCTTTAAGAAGAATCGACGAAGGAGCTGCAATGATAAGAACAAAAGGAGAAGCTGGAACAGGAGATGTAATTGAAGCT
GTAAAACATATGAGGGCCGTAAATGAAGGTATTGCAAAAGTAGTTGGATACTATGAAATGGGATGCGATAGAGAGCTTGT
TCAAATGGCAAGAAATGAATTAAAAGTGCCTATGGATTTAGTGTATGAAGTAGCAGAATTAAAAAGACTTCCAGTAGTTA
ATTTTGCAGCAGGAGGTATTGCAACACCAGCAGATGCGGCTTTAATGATGCAGTTGGGCTGTGATGGTGTATTTGTAGGT
TCTGGAATATTTAAATCAGGAAACCCAGAGGAAAGAGCTAGGGCAATTGTTGAAGCTACATACAACTATGATAAGCCAGA
TGTAATAGCAGAAGTAAGTAAAAATCTTGGAGAAGCCATGGTTGGAATTAATGTTGATGCAATTCCTGAAAAGGAGCTCC
TTGCAAAGAGAGGAATTTAA

Upstream 100 bases:

>100_bases
TATTTTACATTTATCCTATATTTGACTTTTCTAGCAGACTTTTCTAACACACCGCCATAAAATACTATAAAATTTAAAAA
AATAATAAAGAGGCATAATT

Downstream 100 bases:

>100_bases
TTTTAATTTATTTCATAAGAAGTCCCCTTCCGTAAGAGAGGGGATGAATTATGATAAAAACTTTTGGTTTTCATATATTT
CCTTCGCTTCGCTCGGAAAT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKKIGTELLKRGFAKMVKHGVVMDVTNPEQARIAEDAGAAAVMALERVPADIRAEGGVSRMSDPEMILEIKDEVSIPVMA
KARIGHFVEAQALESLGIDMVDESEVLTPADEIHHIDKNAFDIPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVIEA
VKHMRAVNEGIAKVVGYYEMGCDRELVQMARNELKVPMDLVYEVAELKRLPVVNFAAGGIATPADAALMMQLGCDGVFVG
SGIFKSGNPEERARAIVEATYNYDKPDVIAEVSKNLGEAMVGINVDAIPEKELLAKRGI

Sequences:

>Translated_299_residues
MKKIGTELLKRGFAKMVKHGVVMDVTNPEQARIAEDAGAAAVMALERVPADIRAEGGVSRMSDPEMILEIKDEVSIPVMA
KARIGHFVEAQALESLGIDMVDESEVLTPADEIHHIDKNAFDIPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVIEA
VKHMRAVNEGIAKVVGYYEMGCDRELVQMARNELKVPMDLVYEVAELKRLPVVNFAAGGIATPADAALMMQLGCDGVFVG
SGIFKSGNPEERARAIVEATYNYDKPDVIAEVSKNLGEAMVGINVDAIPEKELLAKRGI
>Mature_299_residues
MKKIGTELLKRGFAKMVKHGVVMDVTNPEQARIAEDAGAAAVMALERVPADIRAEGGVSRMSDPEMILEIKDEVSIPVMA
KARIGHFVEAQALESLGIDMVDESEVLTPADEIHHIDKNAFDIPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVIEA
VKHMRAVNEGIAKVVGYYEMGCDRELVQMARNELKVPMDLVYEVAELKRLPVVNFAAGGIATPADAALMMQLGCDGVFVG
SGIFKSGNPEERARAIVEATYNYDKPDVIAEVSKNLGEAMVGINVDAIPEKELLAKRGI

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=280, Percent_Identity=62.1428571428571, Blast_Score=354, Evalue=1e-98,
Organism=Saccharomyces cerevisiae, GI6321049, Length=283, Percent_Identity=63.2508833922262, Blast_Score=348, Evalue=5e-97,
Organism=Saccharomyces cerevisiae, GI6323996, Length=283, Percent_Identity=62.8975265017668, Blast_Score=348, Evalue=7e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_META3 (A6UWM0)

Other databases:

- EMBL:   CP000743
- RefSeq:   YP_001325504.1
- ProteinModelPortal:   A6UWM0
- SMR:   A6UWM0
- STRING:   A6UWM0
- GeneID:   5327242
- GenomeReviews:   CP000743_GR
- KEGG:   mae:Maeo_1316
- eggNOG:   arNOG04544
- HOGENOM:   HBG292342
- OMA:   ARMSDPD
- ProtClustDB:   PRK04180
- BioCyc:   MAEO419665:MAEO_1316-MONOMER
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271
- TIGRFAMs:   TIGR00343

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 32230; Mature: 32230

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIGTELLKRGFAKMVKHGVVMDVTNPEQARIAEDAGAAAVMALERVPADIRAEGGVSR
CCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHCCHHHHHHHHHCCCHHCCCCCCCC
MSDPEMILEIKDEVSIPVMAKARIGHFVEAQALESLGIDMVDESEVLTPADEIHHIDKNA
CCCCHHEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCC
FDIPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVIEAVKHMRAVNEGIAKVVGYYEM
CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GCDRELVQMARNELKVPMDLVYEVAELKRLPVVNFAAGGIATPADAALMMQLGCDGVFVG
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEC
SGIFKSGNPEERARAIVEATYNYDKPDVIAEVSKNLGEAMVGINVDAIPEKELLAKRGI
CCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MKKIGTELLKRGFAKMVKHGVVMDVTNPEQARIAEDAGAAAVMALERVPADIRAEGGVSR
CCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHCCHHHHHHHHHCCCHHCCCCCCCC
MSDPEMILEIKDEVSIPVMAKARIGHFVEAQALESLGIDMVDESEVLTPADEIHHIDKNA
CCCCHHEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCC
FDIPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVIEAVKHMRAVNEGIAKVVGYYEM
CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GCDRELVQMARNELKVPMDLVYEVAELKRLPVVNFAAGGIATPADAALMMQLGCDGVFVG
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEC
SGIFKSGNPEERARAIVEATYNYDKPDVIAEVSKNLGEAMVGINVDAIPEKELLAKRGI
CCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA