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The map label for this gene is ygcF [C]

Identifier: 150401262

GI number: 150401262

Start: 863874

End: 864620

Strand: Reverse

Name: ygcF [C]

Synonym: Maeo_0834

Alternate gene names: 150401262

Gene position: 864620-863874 (Counterclockwise)

Preceding gene: 150401266

Following gene: 150401260

Centisome position: 55.09

GC content: 28.38

Gene sequence:

>747_bases
TTGATTAGTGAAGTCTTTTCGTCGATTATGGGCGAAGGAAAATTTATTGGGCGAAGATATATATTTATTCGATTTAAAGG
CTGTCCTCTTAACTGTATTTACTGTGATGAATATACAAAAAATGATATGCCGTGCAGAGTTGAAGAAGTATCCGGGAGTG
GAATATTTAAAGAATATATAAATACGGCAGAAAACAACAATTTAATTGAAATAATTAATAAAATAAAGACGCCTGATTTA
TTTGCTATTTCATTTACTGGTGGTGAGCCATTATTATATGCAGATAAAATTAAAGAATACTCCGATATATTAAATGATTT
AGGCCATAAAACACATTTAGAAAGCAACGGAATGTTTCCAGATAAAATTAATTATTTTGATTATTCTTCGATAGACATAA
AATTAAAGGAGCATTTTGATTTTAATAATTTTAACAGTAAAAAATACGATGAATTATACAACAATGAATTAAAATCAATT
GAAAAATTATATAATTTGGGTTCTGATGTATATGGTAAGGTTGTAATTATGGAAAATACAACACCTGAAACAGTTGAACA
AGTGGCAAAGGATTTATCAGATATTGGGGACGATATTATTTTATGTATTCAACCAGTTAGCCCATTTAAAGATATAAAAT
CACCATCTCAGCAAAATCTTTTAAAAATAATGGAGGTTTGTGGTAATCATTTGGGTGATAGCGTAATATGCACATCACAA
ATCCACAAATATTTAGGAATGTTGTAA

Upstream 100 bases:

>100_bases
ATAAGAATTATATTGTAAATAAGATATAATACATAAAAAATAAAATATTAATGGTATAACGGTAAAATGATTTTAATATA
AAATAAAAACGGTGATTATT

Downstream 100 bases:

>100_bases
AAATATAATATAATCATATAATAAAAGAATAATATTAACTATATGTCTGTTATTCTTCTTCCTTTACTACATATGCCCCA
GCCCCCAGCGTAGTATAGTA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCRVEEVSGSGIFKEYINTAENNNLIEIINKIKTPDL
FAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNGMFPDKINYFDYSSIDIKLKEHFDFNNFNSKKYDELYNNELKSI
EKLYNLGSDVYGKVVIMENTTPETVEQVAKDLSDIGDDIILCIQPVSPFKDIKSPSQQNLLKIMEVCGNHLGDSVICTSQ
IHKYLGML

Sequences:

>Translated_248_residues
MISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCRVEEVSGSGIFKEYINTAENNNLIEIINKIKTPDL
FAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNGMFPDKINYFDYSSIDIKLKEHFDFNNFNSKKYDELYNNELKSI
EKLYNLGSDVYGKVVIMENTTPETVEQVAKDLSDIGDDIILCIQPVSPFKDIKSPSQQNLLKIMEVCGNHLGDSVICTSQ
IHKYLGML
>Mature_248_residues
MISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCRVEEVSGSGIFKEYINTAENNNLIEIINKIKTPDL
FAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNGMFPDKINYFDYSSIDIKLKEHFDFNNFNSKKYDELYNNELKSI
EKLYNLGSDVYGKVVIMENTTPETVEQVAKDLSDIGDDIILCIQPVSPFKDIKSPSQQNLLKIMEVCGNHLGDSVICTSQ
IHKYLGML

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 28315; Mature: 28315

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCRVEEVSGSGIFKEYI
CHHHHHHHHHCCCCEECEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHH
NTAENNNLIEIINKIKTPDLFAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNGMFP
HHCCCCCHHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCEECCCCCCCC
DKINYFDYSSIDIKLKEHFDFNNFNSKKYDELYNNELKSIEKLYNLGSDVYGKVVIMENT
CCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
TPETVEQVAKDLSDIGDDIILCIQPVSPFKDIKSPSQQNLLKIMEVCGNHLGDSVICTSQ
CHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEHHH
IHKYLGML
HHHHHCCC
>Mature Secondary Structure
MISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCRVEEVSGSGIFKEYI
CHHHHHHHHHCCCCEECEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHH
NTAENNNLIEIINKIKTPDLFAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNGMFP
HHCCCCCHHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCEECCCCCCCC
DKINYFDYSSIDIKLKEHFDFNNFNSKKYDELYNNELKSIEKLYNLGSDVYGKVVIMENT
CCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
TPETVEQVAKDLSDIGDDIILCIQPVSPFKDIKSPSQQNLLKIMEVCGNHLGDSVICTSQ
CHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEHHH
IHKYLGML
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]