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The map label for this gene is rpa [H]

Identifier: 150400778

GI number: 150400778

Start: 365422

End: 367377

Strand: Reverse

Name: rpa [H]

Synonym: Maeo_0345

Alternate gene names: 150400778

Gene position: 367377-365422 (Counterclockwise)

Preceding gene: 150400787

Following gene: 150400777

Centisome position: 23.41

GC content: 31.6

Gene sequence:

>1956_bases
ATGAATATTGATAAAATAAAACAAAAAATACTAGAAAAAATATCCGAAGAGGAATTGGCTAAAGAAATAGACAGTATAAT
CCAAGAACATGGCGGATTAATCGGAGAAGACGCCGCAATTAATACAATAGCAAGGGACATTGGGATTAATATTGAAGAAG
AATATGATGAGGAAGAATGTAAATTTTTAATTAAAGATATCTCCGAAGGACAGTCAAATGTGGAAATAACAGCAAAAATT
ATAGATATGACTGATTTAAGAGAATTTAATAAAAAAGATGGCACAACTGGGACTGTTAGAAGTATAGTTATTGCAGATAA
TACGGGCTCCATTAGATTAACTCTTTGGAATGATAAAGCCAACATAGTAGATAACTTGGAAATAAGAGATGTAATAGAAA
TAACAGGTGCCTTTTCAAGACAATGGAACAATAGAATTGAATTAAATAGTGGTTCCGATACAAAAATTGAAAAAATAGAA
ATAGGAGATTATGACGAATCCATGTATCCCATAGTAAAAGATTATTATAAAATAGGGGAGCTCCAAGCAAATAATCCTGC
CACAATTAAGGGGGAGATTACAATATGCTATGCCGTAAGAGAATTTCCAAAAAGAAACGGCGAAACCGGTAGAGTAAAAT
CATTTATATTAAAAGACGAAACTGGCACAATTAGGGGAACCCTTTGGGACGATAACACCGAAATAAACCTAAATAAAGGT
GATATCGTAGAAGTAAAAGGAATGGTTAAAGAAGGATTTAGAGAGGGACTTGACATTAATGTAAATAATATTAAAATTAT
AGGAAAGGCAGAAGTTGAGGAAATTGAGGCAAAAGATGAAACCATTGAAAATTTACCAAATTGCAACGGGGAAATTGTAA
ATGTAAAGGGAAGAATAATAAATATATCAAATCCAAAAACCGTTAATTTTGGGGATAGGGATGTGGAAGTTCAAGAAATT
ACAATTACAGATAGCACTGGGACTATTGGTGTGGCTTTCTGGGGAAATGCCATGAATAAAATAAAAGAAGCTTCGATTAA
AGAAGGAGACGGAGTAAAAATTACAAATTGTAAGGTAAAAACCTACGAAAATTACGAAGGAAAAATTATAGCTTCTTTGT
CTGCACAATATGGCACTGAAATAATTAAAGATGAAACTGTGGGAGCTCCCGAATATTCTGAAAATATTATAAAAATAAAA
GATATATTTAGTTTAGATGAAGAAAAAAGGAATGATATTTCTGTAATTGGTAAGGTATCAGATTTATACGACCTTAGGAC
ATTTGAAAGAAGAAATGGCTCAACTGGAAAAGTTAGAAGTTTAATGTTAGAGGATGAAACTGGTAAAATTAGATTAACTC
TATGGGATAGTGATGCTGAATTAGAAATTAAAGAGGGAGATGTAATAAAAGTAGTAAGGGGATATGTTAAAGAAAATGGG
GACTATTACGACCTAAATATTGGTAGAATTGGAAAATTAATAATTAATCCAGAGGGAATATCCGTCGATATAAAAACCAG
TAGGAAATTTATTAAGGAGCTCCAAGAGGAAGATACTACGGAAATTAGGGGGGCTGTCGTAGATTACAGAAAACAAAATT
TAGTGCTATATTTATGTCCTAATTGTAATAAAAGAGTGGCATTAGTCGAAGGAGTTTATGATTGTGAAGAATGTGGAGAG
GTATCTCCAAAAGAATTAATTACTGCAACTATTACAGTGGATGATGGAACAAGCAACATATCTTGCAAATTATATGGCTC
TGCTGTGGCAAAATTAACAAATACGCCACTAAATGAGTTAAAAGATGCTAATTTAGATATTTTAGAAAATATATTGGGAA
GTGAATTTGTATTTTCTGGATTGGCTAAAACTGGATATAATGACCTTGAATTCTCTGTAAGAAATGTAAAATCTGTTGAT
TTAGATAAAGAAATTGAATTATTAAAGGAATTATAA

Upstream 100 bases:

>100_bases
TTGATCTATTGTCTTATATATTATATTTATAGTATATTTATACTATATTTTTATAATCTTTTATTATATTATTTATATTA
TTAAATTATTTGGTGGAATT

Downstream 100 bases:

>100_bases
TATAACATATAGATATTACTATAAATAATATTAGATATTATTAATATTATTCATTATAATTTACTTTTTTTTATTGTTGG
TGTTATTACGAAATTAATAT

Product: replication factor A

Products: NA

Alternate protein names: RF-A; RP-A; Replication factor A protein 1; Single-stranded DNA-binding protein; mjaSSB [H]

Number of amino acids: Translated: 651; Mature: 651

Protein sequence:

>651_residues
MNIDKIKQKILEKISEEELAKEIDSIIQEHGGLIGEDAAINTIARDIGINIEEEYDEEECKFLIKDISEGQSNVEITAKI
IDMTDLREFNKKDGTTGTVRSIVIADNTGSIRLTLWNDKANIVDNLEIRDVIEITGAFSRQWNNRIELNSGSDTKIEKIE
IGDYDESMYPIVKDYYKIGELQANNPATIKGEITICYAVREFPKRNGETGRVKSFILKDETGTIRGTLWDDNTEINLNKG
DIVEVKGMVKEGFREGLDINVNNIKIIGKAEVEEIEAKDETIENLPNCNGEIVNVKGRIINISNPKTVNFGDRDVEVQEI
TITDSTGTIGVAFWGNAMNKIKEASIKEGDGVKITNCKVKTYENYEGKIIASLSAQYGTEIIKDETVGAPEYSENIIKIK
DIFSLDEEKRNDISVIGKVSDLYDLRTFERRNGSTGKVRSLMLEDETGKIRLTLWDSDAELEIKEGDVIKVVRGYVKENG
DYYDLNIGRIGKLIINPEGISVDIKTSRKFIKELQEEDTTEIRGAVVDYRKQNLVLYLCPNCNKRVALVEGVYDCEECGE
VSPKELITATITVDDGTSNISCKLYGSAVAKLTNTPLNELKDANLDILENILGSEFVFSGLAKTGYNDLEFSVRNVKSVD
LDKEIELLKEL

Sequences:

>Translated_651_residues
MNIDKIKQKILEKISEEELAKEIDSIIQEHGGLIGEDAAINTIARDIGINIEEEYDEEECKFLIKDISEGQSNVEITAKI
IDMTDLREFNKKDGTTGTVRSIVIADNTGSIRLTLWNDKANIVDNLEIRDVIEITGAFSRQWNNRIELNSGSDTKIEKIE
IGDYDESMYPIVKDYYKIGELQANNPATIKGEITICYAVREFPKRNGETGRVKSFILKDETGTIRGTLWDDNTEINLNKG
DIVEVKGMVKEGFREGLDINVNNIKIIGKAEVEEIEAKDETIENLPNCNGEIVNVKGRIINISNPKTVNFGDRDVEVQEI
TITDSTGTIGVAFWGNAMNKIKEASIKEGDGVKITNCKVKTYENYEGKIIASLSAQYGTEIIKDETVGAPEYSENIIKIK
DIFSLDEEKRNDISVIGKVSDLYDLRTFERRNGSTGKVRSLMLEDETGKIRLTLWDSDAELEIKEGDVIKVVRGYVKENG
DYYDLNIGRIGKLIINPEGISVDIKTSRKFIKELQEEDTTEIRGAVVDYRKQNLVLYLCPNCNKRVALVEGVYDCEECGE
VSPKELITATITVDDGTSNISCKLYGSAVAKLTNTPLNELKDANLDILENILGSEFVFSGLAKTGYNDLEFSVRNVKSVD
LDKEIELLKEL
>Mature_651_residues
MNIDKIKQKILEKISEEELAKEIDSIIQEHGGLIGEDAAINTIARDIGINIEEEYDEEECKFLIKDISEGQSNVEITAKI
IDMTDLREFNKKDGTTGTVRSIVIADNTGSIRLTLWNDKANIVDNLEIRDVIEITGAFSRQWNNRIELNSGSDTKIEKIE
IGDYDESMYPIVKDYYKIGELQANNPATIKGEITICYAVREFPKRNGETGRVKSFILKDETGTIRGTLWDDNTEINLNKG
DIVEVKGMVKEGFREGLDINVNNIKIIGKAEVEEIEAKDETIENLPNCNGEIVNVKGRIINISNPKTVNFGDRDVEVQEI
TITDSTGTIGVAFWGNAMNKIKEASIKEGDGVKITNCKVKTYENYEGKIIASLSAQYGTEIIKDETVGAPEYSENIIKIK
DIFSLDEEKRNDISVIGKVSDLYDLRTFERRNGSTGKVRSLMLEDETGKIRLTLWDSDAELEIKEGDVIKVVRGYVKENG
DYYDLNIGRIGKLIINPEGISVDIKTSRKFIKELQEEDTTEIRGAVVDYRKQNLVLYLCPNCNKRVALVEGVYDCEECGE
VSPKELITATITVDDGTSNISCKLYGSAVAKLTNTPLNELKDANLDILENILGSEFVFSGLAKTGYNDLEFSVRNVKSVD
LDKEIELLKEL

Specific function: Probably plays an essential for replication of the chromosome, DNA recombination and repair [H]

COG id: COG1599

COG function: function code L; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 OB DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR013955 [H]

Pfam domain/function: PF08646 Rep_fac-A_C; PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 72893; Mature: 72893

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDKIKQKILEKISEEELAKEIDSIIQEHGGLIGEDAAINTIARDIGINIEEEYDEEEC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHCCCHHHH
KFLIKDISEGQSNVEITAKIIDMTDLREFNKKDGTTGTVRSIVIADNTGSIRLTLWNDKA
HHHHHHHHCCCCCEEEEEEEECHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCC
NIVDNLEIRDVIEITGAFSRQWNNRIELNSGSDTKIEKIEIGDYDESMYPIVKDYYKIGE
CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC
LQANNPATIKGEITICYAVREFPKRNGETGRVKSFILKDETGTIRGTLWDDNTEINLNKG
EECCCCCEEEEEEEEEEEEHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEECCC
DIVEVKGMVKEGFREGLDINVNNIKIIGKAEVEEIEAKDETIENLPNCNGEIVNVKGRII
CEEEEHHHHHHHHHCCCCEEECCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
NISNPKTVNFGDRDVEVQEITITDSTGTIGVAFWGNAMNKIKEASIKEGDGVKITNCKVK
ECCCCCEECCCCCCEEEEEEEEECCCCEEEEEEECCHHHHHHHHCCCCCCCEEEEEEEEE
TYENYEGKIIASLSAQYGTEIIKDETVGAPEYSENIIKIKDIFSLDEEKRNDISVIGKVS
EECCCCCEEEEEECHHHCCHHHCCCCCCCCCHHCCEEEEEHHHCCCCCCCCCEEEEEEHH
DLYDLRTFERRNGSTGKVRSLMLEDETGKIRLTLWDSDAELEIKEGDVIKVVRGYVKENG
HHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCCEEHHHHHHHHCCC
DYYDLNIGRIGKLIINPEGISVDIKTSRKFIKELQEEDTTEIRGAVVDYRKQNLVLYLCP
CEEEEECCCEEEEEECCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHEEECCCCEEEEECC
NCNKRVALVEGVYDCEECGEVSPKELITATITVDDGTSNISCKLYGSAVAKLTNTPLNEL
CCCCEEEEEECCCCHHHHCCCCCHHEEEEEEEEECCCCEEEEEEECHHHHHHCCCCHHHH
KDANLDILENILGSEFVFSGLAKTGYNDLEFSVRNVKSVDLDKEIELLKEL
CCCCHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MNIDKIKQKILEKISEEELAKEIDSIIQEHGGLIGEDAAINTIARDIGINIEEEYDEEEC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHCCCHHHH
KFLIKDISEGQSNVEITAKIIDMTDLREFNKKDGTTGTVRSIVIADNTGSIRLTLWNDKA
HHHHHHHHCCCCCEEEEEEEECHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCC
NIVDNLEIRDVIEITGAFSRQWNNRIELNSGSDTKIEKIEIGDYDESMYPIVKDYYKIGE
CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC
LQANNPATIKGEITICYAVREFPKRNGETGRVKSFILKDETGTIRGTLWDDNTEINLNKG
EECCCCCEEEEEEEEEEEEHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEECCC
DIVEVKGMVKEGFREGLDINVNNIKIIGKAEVEEIEAKDETIENLPNCNGEIVNVKGRII
CEEEEHHHHHHHHHCCCCEEECCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
NISNPKTVNFGDRDVEVQEITITDSTGTIGVAFWGNAMNKIKEASIKEGDGVKITNCKVK
ECCCCCEECCCCCCEEEEEEEEECCCCEEEEEEECCHHHHHHHHCCCCCCCEEEEEEEEE
TYENYEGKIIASLSAQYGTEIIKDETVGAPEYSENIIKIKDIFSLDEEKRNDISVIGKVS
EECCCCCEEEEEECHHHCCHHHCCCCCCCCCHHCCEEEEEHHHCCCCCCCCCEEEEEEHH
DLYDLRTFERRNGSTGKVRSLMLEDETGKIRLTLWDSDAELEIKEGDVIKVVRGYVKENG
HHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCCEEHHHHHHHHCCC
DYYDLNIGRIGKLIINPEGISVDIKTSRKFIKELQEEDTTEIRGAVVDYRKQNLVLYLCP
CEEEEECCCEEEEEECCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHEEECCCCEEEEECC
NCNKRVALVEGVYDCEECGEVSPKELITATITVDDGTSNISCKLYGSAVAKLTNTPLNEL
CCCCEEEEEECCCCHHHHCCCCCHHEEEEEEEEECCCCEEEEEEECHHHHHHCCCCHHHH
KDANLDILENILGSEFVFSGLAKTGYNDLEFSVRNVKSVDLDKEIELLKEL
CCCCHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087; 9843941 [H]