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The map label for this gene is 150400618

Identifier: 150400618

GI number: 150400618

Start: 196890

End: 197591

Strand: Reverse

Name: 150400618

Synonym: Maeo_0180

Alternate gene names: NA

Gene position: 197591-196890 (Counterclockwise)

Preceding gene: 150400619

Following gene: 150400617

Centisome position: 12.59

GC content: 33.05

Gene sequence:

>702_bases
ATGGTGCCATTGGAAAAAGCTGTAATTGCACGGCTTCAATCCCACGGGGAGAAGTTTGAGGTATTGGTGGACCCTTATCT
GTCTGCTAAATTTAAAGAAGGGCAAAAACTGGATATTTCTGAAATACTAGCATCTGAGGACATATATAAGGATTCTGGAA
AAGGAGAGAAGGTCCCAGATGAATTATTAGAAAAAATATTTGGAACTACTGATAAAAAGGAAGTTGCAAAAAAAATTGTA
TTAAAGGGAACAGTTCAACTTACTTCACAGCAGAGAAAAGAAATGAAGGAACAAAAAAGAAAACAAATCATTTCTTTAAT
TGCAAGAAACACCATAAACCCTCAAACTGATACACCTCACCCTCCAAACAGAATTGAAAAAGTAATGGAGGAAATACGGG
CAAACATAGATATTTATAAAAGTGCCGAAGAACAAATTCCGGATATTATTAAGGATATTAGGAGATTAATTCCAATTAAG
TTTGAAAAAAGAGATCTTGCTGTTAGAATTCCAGCAGAATATTCCACAACTGCATACCATTCAGTTAGTAATTATGGAAC
CATAAAAAAAGAAGAATGGCAATCAGACGGTTCTCTTGTTTTTGTTATAGAGATTCCAAGTGGTATTGAAACTGAATTCT
ACGGACATTTAAATAAAATTACAAAAGGAAATGTTCAAACAAAAATATTAAAGCGATATTAA

Upstream 100 bases:

>100_bases
AATTAAAATATCAATGTCATTTATTAAAATGTATCATATAAAATCATATATCAAAATGATTATATAATCGAAAGGTATAT
AAATAAAAAAAGGAGATATT

Downstream 100 bases:

>100_bases
TATTCTAAAATGATTTATTATTATATAAAACATAGATTTATAAATAAATACAAAGAAAAAAATAATATACAAAGCGGTGA
TTAAAATGGTAGAATTTAGC

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MVPLEKAVIARLQSHGEKFEVLVDPYLSAKFKEGQKLDISEILASEDIYKDSGKGEKVPDELLEKIFGTTDKKEVAKKIV
LKGTVQLTSQQRKEMKEQKRKQIISLIARNTINPQTDTPHPPNRIEKVMEEIRANIDIYKSAEEQIPDIIKDIRRLIPIK
FEKRDLAVRIPAEYSTTAYHSVSNYGTIKKEEWQSDGSLVFVIEIPSGIETEFYGHLNKITKGNVQTKILKRY

Sequences:

>Translated_233_residues
MVPLEKAVIARLQSHGEKFEVLVDPYLSAKFKEGQKLDISEILASEDIYKDSGKGEKVPDELLEKIFGTTDKKEVAKKIV
LKGTVQLTSQQRKEMKEQKRKQIISLIARNTINPQTDTPHPPNRIEKVMEEIRANIDIYKSAEEQIPDIIKDIRRLIPIK
FEKRDLAVRIPAEYSTTAYHSVSNYGTIKKEEWQSDGSLVFVIEIPSGIETEFYGHLNKITKGNVQTKILKRY
>Mature_233_residues
MVPLEKAVIARLQSHGEKFEVLVDPYLSAKFKEGQKLDISEILASEDIYKDSGKGEKVPDELLEKIFGTTDKKEVAKKIV
LKGTVQLTSQQRKEMKEQKRKQIISLIARNTINPQTDTPHPPNRIEKVMEEIRANIDIYKSAEEQIPDIIKDIRRLIPIK
FEKRDLAVRIPAEYSTTAYHSVSNYGTIKKEEWQSDGSLVFVIEIPSGIETEFYGHLNKITKGNVQTKILKRY

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=169, Percent_Identity=26.6272189349112, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI25144459, Length=228, Percent_Identity=26.7543859649123, Blast_Score=94, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6323050, Length=171, Percent_Identity=27.4853801169591, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24659572, Length=167, Percent_Identity=24.5508982035928, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140
- InterPro:   IPR014710 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 26723; Mature: 26723

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPLEKAVIARLQSHGEKFEVLVDPYLSAKFKEGQKLDISEILASEDIYKDSGKGEKVPD
CCCHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH
ELLEKIFGTTDKKEVAKKIVLKGTVQLTSQQRKEMKEQKRKQIISLIARNTINPQTDTPH
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPNRIEKVMEEIRANIDIYKSAEEQIPDIIKDIRRLIPIKFEKRDLAVRIPAEYSTTAYH
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHH
SVSNYGTIKKEEWQSDGSLVFVIEIPSGIETEFYGHLNKITKGNVQTKILKRY
HHHHCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure
MVPLEKAVIARLQSHGEKFEVLVDPYLSAKFKEGQKLDISEILASEDIYKDSGKGEKVPD
CCCHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH
ELLEKIFGTTDKKEVAKKIVLKGTVQLTSQQRKEMKEQKRKQIISLIARNTINPQTDTPH
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPNRIEKVMEEIRANIDIYKSAEEQIPDIIKDIRRLIPIKFEKRDLAVRIPAEYSTTAYH
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHH
SVSNYGTIKKEEWQSDGSLVFVIEIPSGIETEFYGHLNKITKGNVQTKILKRY
HHHHCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]