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The map label for this gene is 150400005

Identifier: 150400005

GI number: 150400005

Start: 1290291

End: 1290995

Strand: Reverse

Name: 150400005

Synonym: Mevan_1263

Alternate gene names: NA

Gene position: 1290995-1290291 (Counterclockwise)

Preceding gene: 150400006

Following gene: 150400004

Centisome position: 75.06

GC content: 37.59

Gene sequence:

>705_bases
ATGGTGTCATTGGACAATGCTGTTATAGCACGACTTCAATCACATGGGGAAAAATTCGAAATACTCGTTGATCCATATTT
GGCAGCCAAATTTAAAGAAGGTCAGCCAATAGCAATATCGGAAATCTTAGCTGCTGAGGCAGTCTACAAGGACTCTGGAA
AGGGAGAAAAAGTTCCAGATGAAATGCTACTAAAGATTTTTGAAACGATAAACCCTTTGGAAATAGCAGAACAGATTTTA
ATAAAAGGACAGGTCCAGTTAACCGCCAATCAAAGGAAAGAAATACATGAACAAAAGCGAAAACAGATCGTGTCATTGAT
TTCAAGAAACACGATTAACCCCCAGACTGATGCTCCCCATCCGCCAAAAAGGATTGAAAATGCTATGGAAGAAGCCAGAA
TTAGCGTTGATATTTATAAAAGCGCTGAAGAACAGGTCCCTAAAATTATAAAGGAATTGAGGAAACTTTTACCCATTAAG
TTTGAAAAAAGGGATATTGTAGTTAAAATCCCTGGTGAATTTGCAGGGACTGCATACCATACAATTCATGAATACGGCAG
TACCAAACAGGAAGAATGGTCGGGGGACGGCTCCCTTGTTTTTGTAATTGAAATTCCAAGCGGTATCGAAAGTGAATTTT
ACTTACACTTAAATAAACTTACGAAAGGAACTGTTCAAACAAAAGTACTTAAAAAATACGACTAA

Upstream 100 bases:

>100_bases
AGAAATAATCTCCTCAAATTATGCTAATTTTGTAATAAAATCTTATATTCGTGTTTTGTTTAATGCGTGGAAAGGTATAT
AAATAAAAGAGGGGATACAT

Downstream 100 bases:

>100_bases
TCAATTTGCGGATAGAAACAGGTGAAATAATGGTAGAATTTAGCCACACAAAGAAAATTGGTTCAGCTGGAAGATTCGGA
CCAAGATACGGTAGAAAAAT

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MVSLDNAVIARLQSHGEKFEILVDPYLAAKFKEGQPIAISEILAAEAVYKDSGKGEKVPDEMLLKIFETINPLEIAEQIL
IKGQVQLTANQRKEIHEQKRKQIVSLISRNTINPQTDAPHPPKRIENAMEEARISVDIYKSAEEQVPKIIKELRKLLPIK
FEKRDIVVKIPGEFAGTAYHTIHEYGSTKQEEWSGDGSLVFVIEIPSGIESEFYLHLNKLTKGTVQTKVLKKYD

Sequences:

>Translated_234_residues
MVSLDNAVIARLQSHGEKFEILVDPYLAAKFKEGQPIAISEILAAEAVYKDSGKGEKVPDEMLLKIFETINPLEIAEQIL
IKGQVQLTANQRKEIHEQKRKQIVSLISRNTINPQTDAPHPPKRIENAMEEARISVDIYKSAEEQVPKIIKELRKLLPIK
FEKRDIVVKIPGEFAGTAYHTIHEYGSTKQEEWSGDGSLVFVIEIPSGIESEFYLHLNKLTKGTVQTKVLKKYD
>Mature_234_residues
MVSLDNAVIARLQSHGEKFEILVDPYLAAKFKEGQPIAISEILAAEAVYKDSGKGEKVPDEMLLKIFETINPLEIAEQIL
IKGQVQLTANQRKEIHEQKRKQIVSLISRNTINPQTDAPHPPKRIENAMEEARISVDIYKSAEEQVPKIIKELRKLLPIK
FEKRDIVVKIPGEFAGTAYHTIHEYGSTKQEEWSGDGSLVFVIEIPSGIESEFYLHLNKLTKGTVQTKVLKKYD

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=158, Percent_Identity=29.746835443038, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI25144459, Length=206, Percent_Identity=29.126213592233, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6323050, Length=171, Percent_Identity=27.4853801169591, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24659572, Length=194, Percent_Identity=25.2577319587629, Blast_Score=84, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140
- InterPro:   IPR014710 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 26486; Mature: 26486

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLDNAVIARLQSHGEKFEILVDPYLAAKFKEGQPIAISEILAAEAVYKDSGKGEKVPD
CCCCHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCH
EMLLKIFETINPLEIAEQILIKGQVQLTANQRKEIHEQKRKQIVSLISRNTINPQTDAPH
HHHHHHHHCCCHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PPKRIENAMEEARISVDIYKSAEEQVPKIIKELRKLLPIKFEKRDIVVKIPGEFAGTAYH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCHHHH
TIHEYGSTKQEEWSGDGSLVFVIEIPSGIESEFYLHLNKLTKGTVQTKVLKKYD
HHHHHCCCCCHHCCCCCCEEEEEECCCCCCCHHEEEEHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MVSLDNAVIARLQSHGEKFEILVDPYLAAKFKEGQPIAISEILAAEAVYKDSGKGEKVPD
CCCCHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCH
EMLLKIFETINPLEIAEQILIKGQVQLTANQRKEIHEQKRKQIVSLISRNTINPQTDAPH
HHHHHHHHCCCHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PPKRIENAMEEARISVDIYKSAEEQVPKIIKELRKLLPIKFEKRDIVVKIPGEFAGTAYH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCHHHH
TIHEYGSTKQEEWSGDGSLVFVIEIPSGIESEFYLHLNKLTKGTVQTKVLKKYD
HHHHHCCCCCHHCCCCCCEEEEEECCCCCCCHHEEEEHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]