| Definition | Methanococcus vannielii SB chromosome, complete genome. |
|---|---|
| Accession | NC_009634 |
| Length | 1,720,048 |
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The map label for this gene is hypF [H]
Identifier: 150399889
GI number: 150399889
Start: 1157876
End: 1160203
Strand: Reverse
Name: hypF [H]
Synonym: Mevan_1145
Alternate gene names: 150399889
Gene position: 1160203-1157876 (Counterclockwise)
Preceding gene: 150399890
Following gene: 150399883
Centisome position: 67.45
GC content: 32.17
Gene sequence:
>2328_bases ATGGAATTAAAAAGAATAGATGTCAAAGGCATCGTTCAGGGAGTTGGATTTCGACCTTTTGTCTACAGAATTGCTAGAGA AAACAAGTTAAAAGGCCATGTTAAAAATATGGGGAATTACGTTGAAATATTAGTTCAAGGTAATTCTAACGATATATCTC TATTTTTATCGGATTTAATCTCGAAAAAACCGCCACTTTCACATTTAAATGATATAAAAATTACAAATATTACTTCAAAA GAAATTTACAGTGATTTTTTTATAAAATTAAGTGAAAAGACAGAAAATGAAGAAGAAGGTACAATTCCACCCGATATTTC AATTTGTGACGAATGCCTATACGAAATTATGAATAAAAATGATAGAAGGGAAGGTTACGCATTTACGGCATGTACAAACT GTGGCCCAAGATTTACAGTAATTGAAAAACTACCCTATGATAGGGAAAACACATCAATGGATGATTTTTCGCTCTGTGAA GCGTGTAAACTTGAATATGAAAACCCGAAAGACCGCAGATTTCATGCTCAAGCAACTTGTTGTAAAAACTGTGGCCCAAA CTTATTTATAACTGACAAATATGGAAAAATAATAAGTAAGTCCATTTATGATGCCGTAAAATTTCTTGAAAATGGTAAAA TACTTGCAATTAAGGGAATTGGTGGAACCCATCTCGTATGTTCTTCAAGCTCAGATACGGCCGTATTGGAGTTAAGGAAA AGACTTAATAGGCCAACTCAAGCATTTGCCATCATGACTAAGGTAGAATATATCAATTACTTTTCGGATACCTCTAAAGT TGAATTAAATACTATTTTATCCCCTAAAAGGCCCATTGTTGCATTGAAAAAGAATAAATTTTATAAAAACTATTTTTCAG CGCATGTTTCAAATTTGGATACTATTGGCGTAATGCTCCCGTATTCAGGGCTCCATTACTTATTATTTGAAAACACTAAC GAAATTTCTTATATAATGACTTCTGCAAATCTTCCAGGACTGCCGATGTCAGTAGATAACGACCAAATTTTAGAAAAATT AGGGGATATTGCAGATTATTTTTTACTTCATGATAGGAAAATAATTAATAGGTGTGATGACAGCGTATTAAAAGAAATAA ACAAAAAAATGATATTTTTAAGGCGTTCTAGAGGATATGCGCCAGAACCTGTTGAAATAATAAATCAAGAAAATATAAAA TACAATAAAAAAAATATTCTTGCATTAGGGCCCGAATTAAACTCCGTCGCCTGCCTTGTTAAAAATAATAAGTTTTACTT AACACAGTATATTGGAAACACTGGAAAATACGAGACATTTAACTACCTAAAAAGTGCTGTTTTAAACCTTATAAAAATTA CAAATACCAATAAAATAGATGCAATAGTCTGTGATTTACATCCTGAGTTTAATTCAACCCATTTTGCAAATGAACTTGGT AAAAAGTACGGTTGTAAAGTTGTACAAATCCAACATCATGAAAGTCATGCTTATTCTTTAATTGGAGACTCGGATAATTT TAAAAATAACATAACAATTGCAATAGACGGTTTAGGGTACGGTAATGATGGAAATATCTGGGGGGGTGAAATATTCTTAT TTAAAGATAAAAATATAGAAAGAATAGGCCATTTAAAAGAGCATTTCCAGCCCGGAGGAGACCTTGCATCAAAATATCCT TTAAGAATGCTTTTATCAATTTTAAAGGAGTTTTTAGAGGTAAAAGAGCTTTTAGAATTTATAAGTCGCTACGGATACTT TTCAGAAAAAGAGCTTAAAATACTTATATTTCAGCTTGAAAAGGGCATCAATGTTTCAAAAACTACATCCACTGGAAGGA TTCTAGATTCAATTTCTGCCCTTTTATCAGTTTGTTTTGAAAAAACTTACGATGGTGAACCATCAATCAGGCTTGAAGCC CTTGCTAATTCTTACTCCGGTTTAAATGCGGAAATTGAAAATGCTGTTAAGGAATCTATCGAAATAACAGGTAATGTATT GAATACAACTAAAATCGTTCAAAAGTGCTATGAAATGCTAATCTACCACGAGCCCGTTGAGAAAATTGCATATTTTGCAC ATATTGCACTTTCAGATGGGCTATCAAAGATTGCGATAGAGAATGCTAAAAAATACAGTATTGAGTACGTGGGAATAACT GGGGGGGTATCATATAATAAAATAATTTGCGAAAGAATTATTGAAAACATAGAAAAGGAATCTTTAAAGCCACTATTTCA CGAAAAAATTCCAAATGGGGATGGAGGAATTTCCTTTGGACAGGCTGTTGGCTATCTCTTAAATTTGGATAAGTACGATA AAATATAA
Upstream 100 bases:
>100_bases GGATGTTCATCATACCCAACGTGTTTATACAGGCGGTTTTTAAATAAAAAACAGTGATTCTTCTTTAAATTTTATTTATT CTTTTTTTTTGGTGACTGTG
Downstream 100 bases:
>100_bases ATATTCATATTAATATATCTAGGAATATAAATGTTAATTTATAGAAATGAAATAAGTTAATGACATTAAAAATGAACTTA ACGTATTTATTGCAGTATTA
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 775; Mature: 775
Protein sequence:
>775_residues MELKRIDVKGIVQGVGFRPFVYRIARENKLKGHVKNMGNYVEILVQGNSNDISLFLSDLISKKPPLSHLNDIKITNITSK EIYSDFFIKLSEKTENEEEGTIPPDISICDECLYEIMNKNDRREGYAFTACTNCGPRFTVIEKLPYDRENTSMDDFSLCE ACKLEYENPKDRRFHAQATCCKNCGPNLFITDKYGKIISKSIYDAVKFLENGKILAIKGIGGTHLVCSSSSDTAVLELRK RLNRPTQAFAIMTKVEYINYFSDTSKVELNTILSPKRPIVALKKNKFYKNYFSAHVSNLDTIGVMLPYSGLHYLLFENTN EISYIMTSANLPGLPMSVDNDQILEKLGDIADYFLLHDRKIINRCDDSVLKEINKKMIFLRRSRGYAPEPVEIINQENIK YNKKNILALGPELNSVACLVKNNKFYLTQYIGNTGKYETFNYLKSAVLNLIKITNTNKIDAIVCDLHPEFNSTHFANELG KKYGCKVVQIQHHESHAYSLIGDSDNFKNNITIAIDGLGYGNDGNIWGGEIFLFKDKNIERIGHLKEHFQPGGDLASKYP LRMLLSILKEFLEVKELLEFISRYGYFSEKELKILIFQLEKGINVSKTTSTGRILDSISALLSVCFEKTYDGEPSIRLEA LANSYSGLNAEIENAVKESIEITGNVLNTTKIVQKCYEMLIYHEPVEKIAYFAHIALSDGLSKIAIENAKKYSIEYVGIT GGVSYNKIICERIIENIEKESLKPLFHEKIPNGDGGISFGQAVGYLLNLDKYDKI
Sequences:
>Translated_775_residues MELKRIDVKGIVQGVGFRPFVYRIARENKLKGHVKNMGNYVEILVQGNSNDISLFLSDLISKKPPLSHLNDIKITNITSK EIYSDFFIKLSEKTENEEEGTIPPDISICDECLYEIMNKNDRREGYAFTACTNCGPRFTVIEKLPYDRENTSMDDFSLCE ACKLEYENPKDRRFHAQATCCKNCGPNLFITDKYGKIISKSIYDAVKFLENGKILAIKGIGGTHLVCSSSSDTAVLELRK RLNRPTQAFAIMTKVEYINYFSDTSKVELNTILSPKRPIVALKKNKFYKNYFSAHVSNLDTIGVMLPYSGLHYLLFENTN EISYIMTSANLPGLPMSVDNDQILEKLGDIADYFLLHDRKIINRCDDSVLKEINKKMIFLRRSRGYAPEPVEIINQENIK YNKKNILALGPELNSVACLVKNNKFYLTQYIGNTGKYETFNYLKSAVLNLIKITNTNKIDAIVCDLHPEFNSTHFANELG KKYGCKVVQIQHHESHAYSLIGDSDNFKNNITIAIDGLGYGNDGNIWGGEIFLFKDKNIERIGHLKEHFQPGGDLASKYP LRMLLSILKEFLEVKELLEFISRYGYFSEKELKILIFQLEKGINVSKTTSTGRILDSISALLSVCFEKTYDGEPSIRLEA LANSYSGLNAEIENAVKESIEITGNVLNTTKIVQKCYEMLIYHEPVEKIAYFAHIALSDGLSKIAIENAKKYSIEYVGIT GGVSYNKIICERIIENIEKESLKPLFHEKIPNGDGGISFGQAVGYLLNLDKYDKI >Mature_775_residues MELKRIDVKGIVQGVGFRPFVYRIARENKLKGHVKNMGNYVEILVQGNSNDISLFLSDLISKKPPLSHLNDIKITNITSK EIYSDFFIKLSEKTENEEEGTIPPDISICDECLYEIMNKNDRREGYAFTACTNCGPRFTVIEKLPYDRENTSMDDFSLCE ACKLEYENPKDRRFHAQATCCKNCGPNLFITDKYGKIISKSIYDAVKFLENGKILAIKGIGGTHLVCSSSSDTAVLELRK RLNRPTQAFAIMTKVEYINYFSDTSKVELNTILSPKRPIVALKKNKFYKNYFSAHVSNLDTIGVMLPYSGLHYLLFENTN EISYIMTSANLPGLPMSVDNDQILEKLGDIADYFLLHDRKIINRCDDSVLKEINKKMIFLRRSRGYAPEPVEIINQENIK YNKKNILALGPELNSVACLVKNNKFYLTQYIGNTGKYETFNYLKSAVLNLIKITNTNKIDAIVCDLHPEFNSTHFANELG KKYGCKVVQIQHHESHAYSLIGDSDNFKNNITIAIDGLGYGNDGNIWGGEIFLFKDKNIERIGHLKEHFQPGGDLASKYP LRMLLSILKEFLEVKELLEFISRYGYFSEKELKILIFQLEKGINVSKTTSTGRILDSISALLSVCFEKTYDGEPSIRLEA LANSYSGLNAEIENAVKESIEITGNVLNTTKIVQKCYEMLIYHEPVEKIAYFAHIALSDGLSKIAIENAKKYSIEYVGIT GGVSYNKIICERIIENIEKESLKPLFHEKIPNGDGGISFGQAVGYLLNLDKYDKI
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=772, Percent_Identity=33.2901554404145, Blast_Score=387, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 87809; Mature: 87809
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELKRIDVKGIVQGVGFRPFVYRIARENKLKGHVKNMGNYVEILVQGNSNDISLFLSDLI CCCEEECHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH SKKPPLSHLNDIKITNITSKEIYSDFFIKLSEKTENEEEGTIPPDISICDECLYEIMNKN CCCCCCCCCCCEEEECCCHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC DRREGYAFTACTNCGPRFTVIEKLPYDRENTSMDDFSLCEACKLEYENPKDRRFHAQATC CCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEHHHHH CKNCGPNLFITDKYGKIISKSIYDAVKFLENGKILAIKGIGGTHLVCSSSSDTAVLELRK HHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCHHHHHHHH RLNRPTQAFAIMTKVEYINYFSDTSKVELNTILSPKRPIVALKKNKFYKNYFSAHVSNLD HHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCCC TIGVMLPYSGLHYLLFENTNEISYIMTSANLPGLPMSVDNDQILEKLGDIADYFLLHDRK EEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH IINRCDDSVLKEINKKMIFLRRSRGYAPEPVEIINQENIKYNKKNILALGPELNSVACLV HHHHCCHHHHHHHHHHEEEEEECCCCCCCCHHHHCCCCCEECCCCEEEECCCCCCEEEEE KNNKFYLTQYIGNTGKYETFNYLKSAVLNLIKITNTNKIDAIVCDLHPEFNSTHFANELG ECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHH KKYGCKVVQIQHHESHAYSLIGDSDNFKNNITIAIDGLGYGNDGNIWGGEIFLFKDKNIE HHHCCEEEEEEECCCCEEEEECCCCCCCCCEEEEEECCEECCCCCCCCCEEEEEECCCHH RIGHLKEHFQPGGDLASKYPLRMLLSILKEFLEVKELLEFISRYGYFSEKELKILIFQLE HHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC KGINVSKTTSTGRILDSISALLSVCFEKTYDGEPSIRLEALANSYSGLNAEIENAVKESI CCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCHHHHHHHHHHH EITGNVLNTTKIVQKCYEMLIYHEPVEKIAYFAHIALSDGLSKIAIENAKKYSIEYVGIT HHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEEE GGVSYNKIICERIIENIEKESLKPLFHEKIPNGDGGISFGQAVGYLLNLDKYDKI CCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHCCHHHCCC >Mature Secondary Structure MELKRIDVKGIVQGVGFRPFVYRIARENKLKGHVKNMGNYVEILVQGNSNDISLFLSDLI CCCEEECHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH SKKPPLSHLNDIKITNITSKEIYSDFFIKLSEKTENEEEGTIPPDISICDECLYEIMNKN CCCCCCCCCCCEEEECCCHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC DRREGYAFTACTNCGPRFTVIEKLPYDRENTSMDDFSLCEACKLEYENPKDRRFHAQATC CCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEHHHHH CKNCGPNLFITDKYGKIISKSIYDAVKFLENGKILAIKGIGGTHLVCSSSSDTAVLELRK HHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCHHHHHHHH RLNRPTQAFAIMTKVEYINYFSDTSKVELNTILSPKRPIVALKKNKFYKNYFSAHVSNLD HHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCCC TIGVMLPYSGLHYLLFENTNEISYIMTSANLPGLPMSVDNDQILEKLGDIADYFLLHDRK EEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH IINRCDDSVLKEINKKMIFLRRSRGYAPEPVEIINQENIKYNKKNILALGPELNSVACLV HHHHCCHHHHHHHHHHEEEEEECCCCCCCCHHHHCCCCCEECCCCEEEECCCCCCEEEEE KNNKFYLTQYIGNTGKYETFNYLKSAVLNLIKITNTNKIDAIVCDLHPEFNSTHFANELG ECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHH KKYGCKVVQIQHHESHAYSLIGDSDNFKNNITIAIDGLGYGNDGNIWGGEIFLFKDKNIE HHHCCEEEEEEECCCCEEEEECCCCCCCCCEEEEEECCEECCCCCCCCCEEEEEECCCHH RIGHLKEHFQPGGDLASKYPLRMLLSILKEFLEVKELLEFISRYGYFSEKELKILIFQLE HHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC KGINVSKTTSTGRILDSISALLSVCFEKTYDGEPSIRLEALANSYSGLNAEIENAVKESI CCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCHHHHHHHHHHH EITGNVLNTTKIVQKCYEMLIYHEPVEKIAYFAHIALSDGLSKIAIENAKKYSIEYVGIT HHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEEE GGVSYNKIICERIIENIEKESLKPLFHEKIPNGDGGISFGQAVGYLLNLDKYDKI CCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]