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The map label for this gene is 150399849

Identifier: 150399849

GI number: 150399849

Start: 1118118

End: 1118441

Strand: Reverse

Name: 150399849

Synonym: Mevan_1104

Alternate gene names: NA

Gene position: 1118441-1118118 (Counterclockwise)

Preceding gene: 150399850

Following gene: 150399848

Centisome position: 65.02

GC content: 35.19

Gene sequence:

>324_bases
ATGATTGGAAAGGAAGTTATTTCCGAAAAACACACCACAATTGCCAATGCACTTGAAATTATGAGTGAACGGGCAAATTT
TGATGAACTATCGTATGAACACGGGTGTGCATTAGATTACTTGCAGAAGTTTTCAAAACTGAATAAAAAAGATGCAGAAT
CAATGCTAGCTCAGCTTTTGAATCTCGGATTAACCGAAAAGATGGCAGTTAAAATAATAGATATTCTTCCAGAAAATGCG
GAAGAGCTAAAAGTCGTTTTTTATAGGTCAGACCTTCCAGAAAATGCAGAAGACGTCTTAGACGTAATATGCAAGTTTAA
ATAA

Upstream 100 bases:

>100_bases
ACAAAGACATCATTGCAAGACCGCAACACCTAAGAGAGTCTAAGCTTTAATTATTTTTAAGATATTCTTTTTTTTAGAAT
AATCTATTTTGAGGGAGATT

Downstream 100 bases:

>100_bases
CGCATTTTTACTATTTTGTTACTAAAACATTAATTTTTTATTAAATTAAGTCTATATTGATATATGATATTATAACTTAA
TACCGAAAAAAGGTGTATTT

Product: RNA polymerase Rpb4

Products: diphosphate; RNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MIGKEVISEKHTTIANALEIMSERANFDELSYEHGCALDYLQKFSKLNKKDAESMLAQLLNLGLTEKMAVKIIDILPENA
EELKVVFYRSDLPENAEDVLDVICKFK

Sequences:

>Translated_107_residues
MIGKEVISEKHTTIANALEIMSERANFDELSYEHGCALDYLQKFSKLNKKDAESMLAQLLNLGLTEKMAVKIIDILPENA
EELKVVFYRSDLPENAEDVLDVICKFK
>Mature_107_residues
MIGKEVISEKHTTIANALEIMSERANFDELSYEHGCALDYLQKFSKLNKKDAESMLAQLLNLGLTEKMAVKIIDILPENA
EELKVVFYRSDLPENAEDVLDVICKFK

Specific function: Unknown

COG id: COG1460

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010997
- InterPro:   IPR015906
- InterPro:   IPR015907
- InterPro:   IPR005574 [H]

Pfam domain/function: PF03874 RNA_pol_Rpb4 [H]

EC number: 2.7.7.6

Molecular weight: Translated: 12164; Mature: 12164

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGKEVISEKHTTIANALEIMSERANFDELSYEHGCALDYLQKFSKLNKKDAESMLAQLL
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
NLGLTEKMAVKIIDILPENAEELKVVFYRSDLPENAEDVLDVICKFK
HCCCCHHHHHHHHHHCCCCHHHHEEHHCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MIGKEVISEKHTTIANALEIMSERANFDELSYEHGCALDYLQKFSKLNKKDAESMLAQLL
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
NLGLTEKMAVKIIDILPENAEELKVVFYRSDLPENAEDVLDVICKFK
HCCCCHHHHHHHHHHCCCCHHHHEEHHCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]