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The map label for this gene is rpoM [H]

Identifier: 150399491

GI number: 150399491

Start: 782730

End: 783047

Strand: Reverse

Name: rpoM [H]

Synonym: Mevan_0740

Alternate gene names: 150399491

Gene position: 783047-782730 (Counterclockwise)

Preceding gene: 150399492

Following gene: 150399485

Centisome position: 45.52

GC content: 34.28

Gene sequence:

>318_bases
ATGGTCGAATTTTGTCCAAAGTGTAACAATATCATGCTTCCAAAAAATGGAAAGTTAAAATGTGTTGTATGCAAACACGA
AGAAGATATTGGTGATGCAAACAAATCCTACGAACTAAAAGAAAAAATAGAAACAAAAAAGCAGGAAGTAACGGTTATTG
AAAATATCGATACAATGCCTATAACAAGAATAGAATGTCCTTCCTGTGGAAACATGGAAGCTTTCTGGTGGTTACAGCAG
ACAAGATGTGCAGATGAACCAGAAACTCGATTTTACAAGTGTAAAAAATGTAGTCACACCTGGAGAGAATATGATTAA

Upstream 100 bases:

>100_bases
GATAAGAACTTTAAAGAAATCGAAAGTTATAAATAATAATTTAACCTCTTTAAGTTGAATTGTATTTATTTTAATCCCGA
TAGACAAAAAAGGTGGGTTT

Downstream 100 bases:

>100_bases
CTATATTTAATAATTTTTTAAGCTTAAATTAAATTTTAAAAAATAAAATTCTTTTTTATAATAAAATTCCATAGTTCAAA
ACAGCTTCAATTATTATTAT

Product: transcription termination factor Tfs

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MVEFCPKCNNIMLPKNGKLKCVVCKHEEDIGDANKSYELKEKIETKKQEVTVIENIDTMPITRIECPSCGNMEAFWWLQQ
TRCADEPETRFYKCKKCSHTWREYD

Sequences:

>Translated_105_residues
MVEFCPKCNNIMLPKNGKLKCVVCKHEEDIGDANKSYELKEKIETKKQEVTVIENIDTMPITRIECPSCGNMEAFWWLQQ
TRCADEPETRFYKCKKCSHTWREYD
>Mature_105_residues
MVEFCPKCNNIMLPKNGKLKCVVCKHEEDIGDANKSYELKEKIETKKQEVTVIENIDTMPITRIECPSCGNMEAFWWLQQ
TRCADEPETRFYKCKKCSHTWREYD

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320250, Length=111, Percent_Identity=35.1351351351351, Blast_Score=68, Evalue=3e-13,
Organism=Drosophila melanogaster, GI78707272, Length=111, Percent_Identity=34.2342342342342, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 12428; Mature: 12428

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2 ; PS01030 RNA_POL_M_15KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
12.4 %Cys+Met (Translated Protein)
8.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
12.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEFCPKCNNIMLPKNGKLKCVVCKHEEDIGDANKSYELKEKIETKKQEVTVIENIDTMP
CCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEEEECCCCCCC
ITRIECPSCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWREYD
CEEEECCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVEFCPKCNNIMLPKNGKLKCVVCKHEEDIGDANKSYELKEKIETKKQEVTVIENIDTMP
CCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEEEECCCCCCC
ITRIECPSCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWREYD
CEEEECCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]