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The map label for this gene is ypdF [C]

Identifier: 150399271

GI number: 150399271

Start: 570679

End: 571698

Strand: Reverse

Name: ypdF [C]

Synonym: Mevan_0519

Alternate gene names: 150399271

Gene position: 571698-570679 (Counterclockwise)

Preceding gene: 150399272

Following gene: 150399270

Centisome position: 33.24

GC content: 30.1

Gene sequence:

>1020_bases
ATGGATAAATTTGGGGAATTTTTAGAATATTTAAAAGAAAATGATATTAAAAAAGCAGTAATTACAAGAAAAGAGAATAT
AACTTATTTTTTAGAAAGATATCCACCTAATTTCTCTATACTTATTTTTGATAGCAACCATGATAAAGTGACTTTACAGG
TGTCAAAACTCGATTTTGAAATGTCAAAAGACTATAAAAATAAAAATCTCGATATTGAACTTTACGAAAACTTTGAAAAT
ACATTTAAAGGCTGTATCGGTTTAGAAGATACTTTACCGATTAAGTTTTTAAAATTTGTTGAAAAATATACGATAATTTC
TAAAAAAATTGATGAAATGCGTGAAATAAAATCAAAAGCAGAAATTCAAAATATAAAAACTGCAGCGAAAATAAGCGACG
AAGCAATTGAATTTGGGACCAATTATGCGTTTGAAAATGACTGCGTAACAGAAAATCAAGTTGCTGCAGAAATAGAGTAT
TTTATGAAAGAAAAGGGAAGCATTCGACCATCATTTGATACAATTGCTATATCTAATAAAAAAACGAGGCTTCCACACGG
AATGCCGTCAAAAGATATTGTAAAAAACATTCTCCTAATGGATATCGGAGCACTTTACGAAGGCTACTGTTCAGATATCA
CTAGAACCGTAATTTTAAATGAAAATATTCAAAAATATTCTGAAGTATATGATGTTGTAAAGAGTGCAAAGTTAGAGGCC
GAAAAAAATTTAAAAGCAGGAATTTCTGTAAAAGAGCTTGATTTAGTTGCAAGGGACCATATGGGCGAATTTAAGGAGTA
TTTTATACATTCTCTCGGCCACGGCGTAGGGGTTGAAGTTCACGAGAGTCCGACAATCTCTTCAAAAATAAAGGAGGATA
TTATTTTAAAAGAGGGAATGGTTATTACGATAGAACCTGGAATTTATACGGATGATTTTGGAGTTAGAATTGAGGATTTA
TATCTCGTAAAAAAGAACGGCTTTGAAAAATTGAGCAATGCAAAAATTTTAAAATATTAA

Upstream 100 bases:

>100_bases
ATCAATTGGATGCAATATCGAAGTAATTTAGGGTATGAATTAATTAAATTTTTAGATTTTTAACTATTTAAAATATTAAT
TAACTTCTAAAGGTGGTTTT

Downstream 100 bases:

>100_bases
TCCGTTTTTAATTTTTTTAATACTACTTCTTTTTCTTCGAAGTTGTAAATTATTTTATCTTTTCTAAATCAAGTGGTTCA
TTTTTAGCTTTTGAAATAAG

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MDKFGEFLEYLKENDIKKAVITRKENITYFLERYPPNFSILIFDSNHDKVTLQVSKLDFEMSKDYKNKNLDIELYENFEN
TFKGCIGLEDTLPIKFLKFVEKYTIISKKIDEMREIKSKAEIQNIKTAAKISDEAIEFGTNYAFENDCVTENQVAAEIEY
FMKEKGSIRPSFDTIAISNKKTRLPHGMPSKDIVKNILLMDIGALYEGYCSDITRTVILNENIQKYSEVYDVVKSAKLEA
EKNLKAGISVKELDLVARDHMGEFKEYFIHSLGHGVGVEVHESPTISSKIKEDIILKEGMVITIEPGIYTDDFGVRIEDL
YLVKKNGFEKLSNAKILKY

Sequences:

>Translated_339_residues
MDKFGEFLEYLKENDIKKAVITRKENITYFLERYPPNFSILIFDSNHDKVTLQVSKLDFEMSKDYKNKNLDIELYENFEN
TFKGCIGLEDTLPIKFLKFVEKYTIISKKIDEMREIKSKAEIQNIKTAAKISDEAIEFGTNYAFENDCVTENQVAAEIEY
FMKEKGSIRPSFDTIAISNKKTRLPHGMPSKDIVKNILLMDIGALYEGYCSDITRTVILNENIQKYSEVYDVVKSAKLEA
EKNLKAGISVKELDLVARDHMGEFKEYFIHSLGHGVGVEVHESPTISSKIKEDIILKEGMVITIEPGIYTDDFGVRIEDL
YLVKKNGFEKLSNAKILKY
>Mature_339_residues
MDKFGEFLEYLKENDIKKAVITRKENITYFLERYPPNFSILIFDSNHDKVTLQVSKLDFEMSKDYKNKNLDIELYENFEN
TFKGCIGLEDTLPIKFLKFVEKYTIISKKIDEMREIKSKAEIQNIKTAAKISDEAIEFGTNYAFENDCVTENQVAAEIEY
FMKEKGSIRPSFDTIAISNKKTRLPHGMPSKDIVKNILLMDIGALYEGYCSDITRTVILNENIQKYSEVYDVVKSAKLEA
EKNLKAGISVKELDLVARDHMGEFKEYFIHSLGHGVGVEVHESPTISSKIKEDIILKEGMVITIEPGIYTDDFGVRIEDL
YLVKKNGFEKLSNAKILKY

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI93141226, Length=170, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI11559925, Length=258, Percent_Identity=26.3565891472868, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI264681563, Length=186, Percent_Identity=31.1827956989247, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1788728, Length=237, Percent_Identity=38.8185654008439, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI1789275, Length=267, Percent_Identity=26.2172284644195, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17509539, Length=163, Percent_Identity=32.5153374233129, Blast_Score=71, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6321118, Length=289, Percent_Identity=29.757785467128, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320922, Length=259, Percent_Identity=25.4826254826255, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322999, Length=269, Percent_Identity=26.3940520446097, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR001714
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 39010; Mature: 39010

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS00491 PROLINE_PEPTIDASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFGEFLEYLKENDIKKAVITRKENITYFLERYPPNFSILIFDSNHDKVTLQVSKLDFE
CCHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCH
MSKDYKNKNLDIELYENFENTFKGCIGLEDTLPIKFLKFVEKYTIISKKIDEMREIKSKA
HHHCCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIQNIKTAAKISDEAIEFGTNYAFENDCVTENQVAAEIEYFMKEKGSIRPSFDTIAISNK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCC
KTRLPHGMPSKDIVKNILLMDIGALYEGYCSDITRTVILNENIQKYSEVYDVVKSAKLEA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHH
EKNLKAGISVKELDLVARDHMGEFKEYFIHSLGHGVGVEVHESPTISSKIKEDIILKEGM
HCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCE
VITIEPGIYTDDFGVRIEDLYLVKKNGFEKLSNAKILKY
EEEECCCEEECCCCCEEEEEEEEECCCCHHHCCCCEECC
>Mature Secondary Structure
MDKFGEFLEYLKENDIKKAVITRKENITYFLERYPPNFSILIFDSNHDKVTLQVSKLDFE
CCHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCH
MSKDYKNKNLDIELYENFENTFKGCIGLEDTLPIKFLKFVEKYTIISKKIDEMREIKSKA
HHHCCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIQNIKTAAKISDEAIEFGTNYAFENDCVTENQVAAEIEYFMKEKGSIRPSFDTIAISNK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCC
KTRLPHGMPSKDIVKNILLMDIGALYEGYCSDITRTVILNENIQKYSEVYDVVKSAKLEA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHH
EKNLKAGISVKELDLVARDHMGEFKEYFIHSLGHGVGVEVHESPTISSKIKEDIILKEGM
HCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCE
VITIEPGIYTDDFGVRIEDLYLVKKNGFEKLSNAKILKY
EEEECCCEEECCCCCEEEEEEEEECCCCHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]