Click here to switch to the map view.

The map label for this gene is ptr2 [H]

Identifier: 150399211

GI number: 150399211

Start: 512758

End: 513180

Strand: Reverse

Name: ptr2 [H]

Synonym: Mevan_0459

Alternate gene names: 150399211

Gene position: 513180-512758 (Counterclockwise)

Preceding gene: 150399217

Following gene: 150399205

Centisome position: 29.84

GC content: 31.68

Gene sequence:

>423_bases
ATGGATGAAAAAGATATGAAAATACTAGATTTTTTAATTCAAGATGGTAGAAAACCATTTACTGAGATTGCAAAAGAATT
AAACACTAGTGAAAGTTCAGTTAGAAAGAGGGTAAAAAAGATGGAAGAGGATGGCGTAATAAAAGGATATTCTGTAATGG
TTGATACTCCAAAAATGGGATATACGGTTGTTGCACAGACTGGGTTTGATACAAATCCTGAAGACTTTTTATCGGTTGCA
CAGGAGCTATGCACATTTGAAGAGGTAAAAAAAGTTTTCACATCAACAGGGGATCACATGATAATGACTGAAATATGGGC
AAAAAATGGAAAAGAGCTCTCTGAAATTATATTTAATAAATTAGGAAAAATTAAGGGAATTAAAAAAGTATGCCCCGCAA
TAATACTTGAACAATTAAAATAA

Upstream 100 bases:

>100_bases
TTCATATTAGGTACAAAACTGATGAATAACGTATATATATTAAATGTTTTTTAATGATAAAATACGAATTAAGGAATATT
TAAAACGTGCGGTGATTTTA

Downstream 100 bases:

>100_bases
CAAATTACTTCCATCAACTTTTATCAAAGGTTGAAAAGTATTATTTTATTTAAATACTATTTAAAATACCTTTCTAAAAT
CCCTTTTAACATTTTAGCAT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MDEKDMKILDFLIQDGRKPFTEIAKELNTSESSVRKRVKKMEEDGVIKGYSVMVDTPKMGYTVVAQTGFDTNPEDFLSVA
QELCTFEEVKKVFTSTGDHMIMTEIWAKNGKELSEIIFNKLGKIKGIKKVCPAIILEQLK

Sequences:

>Translated_140_residues
MDEKDMKILDFLIQDGRKPFTEIAKELNTSESSVRKRVKKMEEDGVIKGYSVMVDTPKMGYTVVAQTGFDTNPEDFLSVA
QELCTFEEVKKVFTSTGDHMIMTEIWAKNGKELSEIIFNKLGKIKGIKKVCPAIILEQLK
>Mature_140_residues
MDEKDMKILDFLIQDGRKPFTEIAKELNTSESSVRKRVKKMEEDGVIKGYSVMVDTPKMGYTVVAQTGFDTNPEDFLSVA
QELCTFEEVKKVFTSTGDHMIMTEIWAKNGKELSEIIFNKLGKIKGIKKVCPAIILEQLK

Specific function: Participates in positive as well as negative regulation of transcription. Binds to its own promoter [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=139, Percent_Identity=26.6187050359712, Blast_Score=66, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 15884; Mature: 15884

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEKDMKILDFLIQDGRKPFTEIAKELNTSESSVRKRVKKMEEDGVIKGYSVMVDTPKMG
CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
YTVVAQTGFDTNPEDFLSVAQELCTFEEVKKVFTSTGDHMIMTEIWAKNGKELSEIIFNK
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
LGKIKGIKKVCPAIILEQLK
HHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MDEKDMKILDFLIQDGRKPFTEIAKELNTSESSVRKRVKKMEEDGVIKGYSVMVDTPKMG
CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
YTVVAQTGFDTNPEDFLSVAQELCTFEEVKKVFTSTGDHMIMTEIWAKNGKELSEIIFNK
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
LGKIKGIKKVCPAIILEQLK
HHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087; 11226165 [H]