| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is wxcX [H]
Identifier: 150010201
GI number: 150010201
Start: 4437118
End: 4438230
Strand: Direct
Name: wxcX [H]
Synonym: BDI_3624
Alternate gene names: 150010201
Gene position: 4437118-4438230 (Clockwise)
Preceding gene: 150010200
Following gene: 150010202
Centisome position: 92.22
GC content: 35.4
Gene sequence:
>1113_bases ATGTCTAGTAAAGTAAAAGTAATAGCTTTTTATTTACCTCAATTTCATCCTATACCAGAAAATGATGAATGGTGGGGGAA AGGATTCACAGAATGGACCAGTGTAGGGCGTGCTAAAAAATATTATAGAGGACATTATCAACCTCGAGTTCCGGCTGATT TGGGGTATTATGATCTACGTTTACCGCAGGTGCGTCAACAACAAGCTGATTTGGCAAAAGAGGCTGGTATTTCAGCTTTT TGTTATTGGCATTATTGGTTTGGTAATGGAAAACAGCTGTTGGAAAATCCGTTACAGGAAGTTGTTAAGTTAGGGGAACC AGATTTTCCTTTTTGTTTAGGATGGGCAAACCATACTTGGCTAAATAAATCGTGGAACAGAGAGAAACAGACGGTTATAC CTAAGCCTTTGATATTGCAAGAGTATCCTGGGAAAAAAGATGTTGATTGTCATTTCTATACTATGCTGCCAATGTTTAGA GATCAGCGTTATTTTCGAATTCATGGAAAGCTCTTGTTTTTAATATATGCGCCATTGGATATACCGAATTTCAAATATTT TAAAATGAGATGGAACGAATTAGCGAGTCAAAATGATTTACCAGGATTTTATTTTATTGCAAATTCAGAAGATATATCCA ATATAAAGAATCCCATTATTCGAGAGTTTGAAGCTGTTTCTCTGTGTCGGTTATATTCGGCTTGGAATATAGAAGGGAAA AAAGTGAATAATATTGTTATACGTATTACACGTAATATATCTCGTATTTTAGGGTATTCTTTGAATAAAATTTCATATAA AAAGGCTATAGAAAAAATTGATACTCCATATTATGAGGAAGATAGAGTGTATCCTAATATTATACCGGGTTGGGATAACT CTCCTCGTCGTGGGCCCGGAGCATTTATCTTTCATAAAGCTACACCTGCATTATTTAAGAAACATGTAAAGATGATATTG AATAGGATAAAAGATAAACCGGATGAGGATAAGGTTATTTTCCTTAAGTCATGGAATGAGTGGGCTGAGGGTAATTATAT GGAACCTGATTTGAAGTGGGGAAAAGGATATATTAGGGCTTTGAGAGAAGCCTTGGAAGAGGATGCTAAATGA
Upstream 100 bases:
>100_bases TGATTTATCAACGACCATTTATTTTTAGTTATTTGTATTTGTTTTTGTTGATATCTCCTATATATGTTTTAAAGAGATAA TATTTTAATTTTTATTCGTA
Downstream 100 bases:
>100_bases TTTAAAATTAATACATTATGAATATCGCATTATTAACCGCCGGAGGAACCGGCACTCGTATGCATCAAGATATACCCAAG CAATTTCTTCATGTTAAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MSSKVKVIAFYLPQFHPIPENDEWWGKGFTEWTSVGRAKKYYRGHYQPRVPADLGYYDLRLPQVRQQQADLAKEAGISAF CYWHYWFGNGKQLLENPLQEVVKLGEPDFPFCLGWANHTWLNKSWNREKQTVIPKPLILQEYPGKKDVDCHFYTMLPMFR DQRYFRIHGKLLFLIYAPLDIPNFKYFKMRWNELASQNDLPGFYFIANSEDISNIKNPIIREFEAVSLCRLYSAWNIEGK KVNNIVIRITRNISRILGYSLNKISYKKAIEKIDTPYYEEDRVYPNIIPGWDNSPRRGPGAFIFHKATPALFKKHVKMIL NRIKDKPDEDKVIFLKSWNEWAEGNYMEPDLKWGKGYIRALREALEEDAK
Sequences:
>Translated_370_residues MSSKVKVIAFYLPQFHPIPENDEWWGKGFTEWTSVGRAKKYYRGHYQPRVPADLGYYDLRLPQVRQQQADLAKEAGISAF CYWHYWFGNGKQLLENPLQEVVKLGEPDFPFCLGWANHTWLNKSWNREKQTVIPKPLILQEYPGKKDVDCHFYTMLPMFR DQRYFRIHGKLLFLIYAPLDIPNFKYFKMRWNELASQNDLPGFYFIANSEDISNIKNPIIREFEAVSLCRLYSAWNIEGK KVNNIVIRITRNISRILGYSLNKISYKKAIEKIDTPYYEEDRVYPNIIPGWDNSPRRGPGAFIFHKATPALFKKHVKMIL NRIKDKPDEDKVIFLKSWNEWAEGNYMEPDLKWGKGYIRALREALEEDAK >Mature_369_residues SSKVKVIAFYLPQFHPIPENDEWWGKGFTEWTSVGRAKKYYRGHYQPRVPADLGYYDLRLPQVRQQQADLAKEAGISAFC YWHYWFGNGKQLLENPLQEVVKLGEPDFPFCLGWANHTWLNKSWNREKQTVIPKPLILQEYPGKKDVDCHFYTMLPMFRD QRYFRIHGKLLFLIYAPLDIPNFKYFKMRWNELASQNDLPGFYFIANSEDISNIKNPIIREFEAVSLCRLYSAWNIEGKK VNNIVIRITRNISRILGYSLNKISYKKAIEKIDTPYYEEDRVYPNIIPGWDNSPRRGPGAFIFHKATPALFKKHVKMILN RIKDKPDEDKVIFLKSWNEWAEGNYMEPDLKWGKGYIRALREALEEDAK
Specific function: Unknown
COG id: COG3754
COG function: function code M; Lipopolysaccharide biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007739 [H]
Pfam domain/function: PF05045 RgpF [H]
EC number: NA
Molecular weight: Translated: 43824; Mature: 43693
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSKVKVIAFYLPQFHPIPENDEWWGKGFTEWTSVGRAKKYYRGHYQPRVPADLGYYDLR CCCCEEEEEEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC LPQVRQQQADLAKEAGISAFCYWHYWFGNGKQLLENPLQEVVKLGEPDFPFCLGWANHTW CCHHHHHHHHHHHHCCCEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCC LNKSWNREKQTVIPKPLILQEYPGKKDVDCHFYTMLPMFRDQRYFRIHGKLLFLIYAPLD CCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECHHHCCCCEEEEECEEEEEEEECCC IPNFKYFKMRWNELASQNDLPGFYFIANSEDISNIKNPIIREFEAVSLCRLYSAWNIEGK CCCCCEEEEEHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KVNNIVIRITRNISRILGYSLNKISYKKAIEKIDTPYYEEDRVYPNIIPGWDNSPRRGPG EECEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC AFIFHKATPALFKKHVKMILNRIKDKPDEDKVIFLKSWNEWAEGNYMEPDLKWGKGYIRA EEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH LREALEEDAK HHHHHHHCCC >Mature Secondary Structure SSKVKVIAFYLPQFHPIPENDEWWGKGFTEWTSVGRAKKYYRGHYQPRVPADLGYYDLR CCCEEEEEEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC LPQVRQQQADLAKEAGISAFCYWHYWFGNGKQLLENPLQEVVKLGEPDFPFCLGWANHTW CCHHHHHHHHHHHHCCCEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCC LNKSWNREKQTVIPKPLILQEYPGKKDVDCHFYTMLPMFRDQRYFRIHGKLLFLIYAPLD CCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECHHHCCCCEEEEECEEEEEEEECCC IPNFKYFKMRWNELASQNDLPGFYFIANSEDISNIKNPIIREFEAVSLCRLYSAWNIEGK CCCCCEEEEEHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KVNNIVIRITRNISRILGYSLNKISYKKAIEKIDTPYYEEDRVYPNIIPGWDNSPRRGPG EECEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC AFIFHKATPALFKKHVKMILNRIKDKPDEDKVIFLKSWNEWAEGNYMEPDLKWGKGYIRA EEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH LREALEEDAK HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9385134 [H]