| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is btuB [H]
Identifier: 150009982
GI number: 150009982
Start: 4136407
End: 4138788
Strand: Direct
Name: btuB [H]
Synonym: BDI_3401
Alternate gene names: 150009982
Gene position: 4136407-4138788 (Clockwise)
Preceding gene: 150009980
Following gene: 150009983
Centisome position: 85.97
GC content: 45.93
Gene sequence:
>2382_bases ATGATGATGAAGAAAATCAGAGGGCTTTTCCTCTCCTTTTTACTGTTGCTTATTTCCATCTCGGCTTTTTCTCAACATAA AACAATGATATCGGGCAAAGTCCTGTCCACGGAAAAAACAACCGTGGATTTCGCTACCGTTTATCTAAAAGGTACGAATT ACGGCGGGACTACGAATGAGGAAGGTATCTATCATCTTCAAGCTCCCGCGGGAGAATATACATTAGTAGTATCGGCTATC GGATATAAGACGGTAGAGAAACCCGTGAAACTGATGCGTGGGGAACGGACGAAGATGAATGTGGTAATCAGCCCTCAAGC TACGGAGTTGGATGAGGTGGTTGTCGTTTCTAATGGCGTGACCCGGCTCAAGCGTTCTGCGTTCAATGCCGTGGCCCTCG ATACGAAAGCCTTGCAAAATTCAACCCAGAACTTGAGTGAAGCCTTGGCTCAAGCGCCCGGAATGAAGATCCGGGAGTCC GGCGGTGTCGGCTCGGATATGCAACTGATGATGGATGGATTTACCGGCAAGCATATCAAGATCTTTATCGATGGGGTTCC GCAAGAAGGTGTCGGCAGTTCTTTCGGACTGAATAACATTCCGGTGAATTATGCCGAGCGTATAGAGGTCTATAAGGGTG TGGTACCGGTGGGTTTCGGAACAGACGCTATCGGAGGTGTTATCAATATCATCACCAAGAAGAACCGGAACAAATGGTTT TTGGATGCTTCTTATTCATACGGGTCTTTCAATACGCATAAATCTTATGTGAACTTCGGACAAACTTTCCGGAGCGGACT CACGTATGAGATCAACGTTTTCCAGAATTATTCGGATAATAATTACTATGTGGATACTCCGGTGAAGGACTTTACGACCG GAGCGATCAATAAGAAAAAGATCGAGCATGTGAAGCGTTTTCATGATACGTATCATAACGAGGCCGTTATCGGGAAAATA GGTTTCGTGGATAAGAAATGGGCGGATCGTTTGATGTTTGGGTTTACCTATTCACATATGTATAAAGATATACAGACGGG CGTACGCCAAGAAGTGGTGTTTGGCGGCAAATATCGGAAGGGATACTCGATCATGCCGTCGTTGGACTATCGCAAGCGTG ATTTCTTCGTTAGGGGCTTGGATGTGGTATTGACGGCGAATTATAATAAGAACATGACGAACAATGTAGATACCTCTTCC TATGAATATAATTGGCGTGGCGAGATGCGTCCGCTCCGGATGCCCGGTGAGCAATCTTATCAGAACACCCGGTCGGATAA TAATAACTGGAACGGAACCTTAACAGCTAACTACCGTATCGGTAAGGCGCATACGTTCACGTTCAATCACGTGATCAACG CGTTCCGGCGTTCGAATCAGTCTCTTTTGAACGAGGACTCGGAAGCGAACGCTATCCCGAAGGAAACCCGTAAAAATATC AGCGGTCTTTCGTATCGCTTGATGCCGACGGAACATTGGAACTTGTCTGTGTTCGGTAAATATTACAACCAGTTTATCGC GGGGCCTGTCGCTACTTCCTCGGCTCAAGATGACTATATACGTACGACCAATTCGGTAAGTGCGATGGGATATGGGGCCG CGGGAACTTACTTTATCTTGAAAAGCTTGCAAGCGAAATTGTCCTATGAGAAAGCCTATCGCCTGCCGACCAATGAGGAG ATGTTTGGCGATGAGGACCTTGAGACCGGCGATATTTCCTTGAGACCGGAGAACAGCGATAACGTGAATCTGAATTTAAG CTACAACGAGACATTCGGTAAGCATTCCGTATATGTGGAAGGCGGATTGATCTACCGAAATACGAAAGATTATATCCAAC GGAATATATCGGATTTGAGCGGCGGTAAATATGGCGCTACCTATGTGAATCATGGTCGTGTAGAGACCAAGGGTTACAAT ATCTCGGTTCGCTACGGTTTCGCTAACTGGGTAAGCGTAGGAGGAAACTTTACGCAGATGAATGTAAGGGATAACGTGAA GACGGTTACCAGCGGGACGAACCAAGAGAGCTTGACATATGGCGCACGTATGCCGAATCTTCCTTATCAGTTTGCCAACT CGGATGTGACCTTCTACTGGCGTAATTTGTGGAAGAAAGGCAATACGCTAAGTGTCACTTACGATAATTTATATATGCAT AGTTTCCCGCTGTATTCGGAGGCAGTAGGCAGTGAATCCGAATTTGTGGTACCAACTCAATTCTCGCATAACCTGACACT CTCTTATGGTATACAGAACGGGCGTTACAATATCTCTTTCGAGTGCAGGAATCTCACGAACGAGAAATTATACGATAACT TCAGCTTGCAGAAGGCTGGCAGGGCTTTCTATGGTAAGGTGAGGGTTTATTTCGGTAATTAA
Upstream 100 bases:
>100_bases CTCCGTAGATTTTTAATGTGATTTTACCCATTCTTAGGTATTGTGGGGCGGTAGTCTCTGATCGTAACTTTGCAACGTTT TAAATAACATAATTGATTAA
Downstream 100 bases:
>100_bases TTTAAAGTGTGACTATCTTTTATTTATCAATAATTAATTCAAAACATAATAGATTAAAACAACATGAAGAAGAATTATTT AATGACAGGTCTTGCCGCTG
Product: putative TonB-linked outer membrane receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MMMKKIRGLFLSFLLLLISISAFSQHKTMISGKVLSTEKTTVDFATVYLKGTNYGGTTNEEGIYHLQAPAGEYTLVVSAI GYKTVEKPVKLMRGERTKMNVVISPQATELDEVVVVSNGVTRLKRSAFNAVALDTKALQNSTQNLSEALAQAPGMKIRES GGVGSDMQLMMDGFTGKHIKIFIDGVPQEGVGSSFGLNNIPVNYAERIEVYKGVVPVGFGTDAIGGVINIITKKNRNKWF LDASYSYGSFNTHKSYVNFGQTFRSGLTYEINVFQNYSDNNYYVDTPVKDFTTGAINKKKIEHVKRFHDTYHNEAVIGKI GFVDKKWADRLMFGFTYSHMYKDIQTGVRQEVVFGGKYRKGYSIMPSLDYRKRDFFVRGLDVVLTANYNKNMTNNVDTSS YEYNWRGEMRPLRMPGEQSYQNTRSDNNNWNGTLTANYRIGKAHTFTFNHVINAFRRSNQSLLNEDSEANAIPKETRKNI SGLSYRLMPTEHWNLSVFGKYYNQFIAGPVATSSAQDDYIRTTNSVSAMGYGAAGTYFILKSLQAKLSYEKAYRLPTNEE MFGDEDLETGDISLRPENSDNVNLNLSYNETFGKHSVYVEGGLIYRNTKDYIQRNISDLSGGKYGATYVNHGRVETKGYN ISVRYGFANWVSVGGNFTQMNVRDNVKTVTSGTNQESLTYGARMPNLPYQFANSDVTFYWRNLWKKGNTLSVTYDNLYMH SFPLYSEAVGSESEFVVPTQFSHNLTLSYGIQNGRYNISFECRNLTNEKLYDNFSLQKAGRAFYGKVRVYFGN
Sequences:
>Translated_793_residues MMMKKIRGLFLSFLLLLISISAFSQHKTMISGKVLSTEKTTVDFATVYLKGTNYGGTTNEEGIYHLQAPAGEYTLVVSAI GYKTVEKPVKLMRGERTKMNVVISPQATELDEVVVVSNGVTRLKRSAFNAVALDTKALQNSTQNLSEALAQAPGMKIRES GGVGSDMQLMMDGFTGKHIKIFIDGVPQEGVGSSFGLNNIPVNYAERIEVYKGVVPVGFGTDAIGGVINIITKKNRNKWF LDASYSYGSFNTHKSYVNFGQTFRSGLTYEINVFQNYSDNNYYVDTPVKDFTTGAINKKKIEHVKRFHDTYHNEAVIGKI GFVDKKWADRLMFGFTYSHMYKDIQTGVRQEVVFGGKYRKGYSIMPSLDYRKRDFFVRGLDVVLTANYNKNMTNNVDTSS YEYNWRGEMRPLRMPGEQSYQNTRSDNNNWNGTLTANYRIGKAHTFTFNHVINAFRRSNQSLLNEDSEANAIPKETRKNI SGLSYRLMPTEHWNLSVFGKYYNQFIAGPVATSSAQDDYIRTTNSVSAMGYGAAGTYFILKSLQAKLSYEKAYRLPTNEE MFGDEDLETGDISLRPENSDNVNLNLSYNETFGKHSVYVEGGLIYRNTKDYIQRNISDLSGGKYGATYVNHGRVETKGYN ISVRYGFANWVSVGGNFTQMNVRDNVKTVTSGTNQESLTYGARMPNLPYQFANSDVTFYWRNLWKKGNTLSVTYDNLYMH SFPLYSEAVGSESEFVVPTQFSHNLTLSYGIQNGRYNISFECRNLTNEKLYDNFSLQKAGRAFYGKVRVYFGN >Mature_793_residues MMMKKIRGLFLSFLLLLISISAFSQHKTMISGKVLSTEKTTVDFATVYLKGTNYGGTTNEEGIYHLQAPAGEYTLVVSAI GYKTVEKPVKLMRGERTKMNVVISPQATELDEVVVVSNGVTRLKRSAFNAVALDTKALQNSTQNLSEALAQAPGMKIRES GGVGSDMQLMMDGFTGKHIKIFIDGVPQEGVGSSFGLNNIPVNYAERIEVYKGVVPVGFGTDAIGGVINIITKKNRNKWF LDASYSYGSFNTHKSYVNFGQTFRSGLTYEINVFQNYSDNNYYVDTPVKDFTTGAINKKKIEHVKRFHDTYHNEAVIGKI GFVDKKWADRLMFGFTYSHMYKDIQTGVRQEVVFGGKYRKGYSIMPSLDYRKRDFFVRGLDVVLTANYNKNMTNNVDTSS YEYNWRGEMRPLRMPGEQSYQNTRSDNNNWNGTLTANYRIGKAHTFTFNHVINAFRRSNQSLLNEDSEANAIPKETRKNI SGLSYRLMPTEHWNLSVFGKYYNQFIAGPVATSSAQDDYIRTTNSVSAMGYGAAGTYFILKSLQAKLSYEKAYRLPTNEE MFGDEDLETGDISLRPENSDNVNLNLSYNETFGKHSVYVEGGLIYRNTKDYIQRNISDLSGGKYGATYVNHGRVETKGYN ISVRYGFANWVSVGGNFTQMNVRDNVKTVTSGTNQESLTYGARMPNLPYQFANSDVTFYWRNLWKKGNTLSVTYDNLYMH SFPLYSEAVGSESEFVVPTQFSHNLTLSYGIQNGRYNISFECRNLTNEKLYDNFSLQKAGRAFYGKVRVYFGN
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG4206
COG function: function code H; Outer membrane cobalamin receptor protein
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=135, Percent_Identity=30.3703703703704, Blast_Score=70, Evalue=6e-13, Organism=Escherichia coli, GI1788478, Length=133, Percent_Identity=33.0827067669173, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1787723, Length=179, Percent_Identity=27.9329608938547, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 89628; Mature: 89628
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMMKKIRGLFLSFLLLLISISAFSQHKTMISGKVLSTEKTTVDFATVYLKGTNYGGTTNE CCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCEEEEEEEEEEECCCCCCCCC EGIYHLQAPAGEYTLVVSAIGYKTVEKPVKLMRGERTKMNVVISPQATELDEVVVVSNGV CCEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCH TRLKRSAFNAVALDTKALQNSTQNLSEALAQAPGMKIRESGGVGSDMQLMMDGFTGKHIK HHHHHHHCCEEEECHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHEECCCCCCEEE IFIDGVPQEGVGSSFGLNNIPVNYAERIEVYKGVVPVGFGTDAIGGVINIITKKNRNKWF EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEECCCCHHHHHHEEEEEECCCCEEE LDASYSYGSFNTHKSYVNFGQTFRSGLTYEINVFQNYSDNNYYVDTPVKDFTTGAINKKK EEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCHHCCCCCCCHHH IEHVKRFHDTYHNEAVIGKIGFVDKKWADRLMFGFTYSHMYKDIQTGVRQEVVFGGKYRK HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHEEECCCCCC GYSIMPSLDYRKRDFFVRGLDVVLTANYNKNMTNNVDTSSYEYNWRGEMRPLRMPGEQSY CCEECCCCCCCCCCEEEECEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEECCCCCHHH QNTRSDNNNWNGTLTANYRIGKAHTFTFNHVINAFRRSNQSLLNEDSEANAIPKETRKNI HHCCCCCCCCCEEEEEEEEECCEEEEEHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHCC SGLSYRLMPTEHWNLSVFGKYYNQFIAGPVATSSAQDDYIRTTNSVSAMGYGAAGTYFIL CCCEEEEECCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHHH KSLQAKLSYEKAYRLPTNEEMFGDEDLETGDISLRPENSDNVNLNLSYNETFGKHSVYVE HHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCEEEEEE GGLIYRNTKDYIQRNISDLSGGKYGATYVNHGRVETKGYNISVRYGFANWVSVGGNFTQM CCEEEECCHHHHHHHHHHCCCCCCCCEEEECCEEEECCEEEEEEECCEEEEECCCCEEEE NVRDNVKTVTSGTNQESLTYGARMPNLPYQFANSDVTFYWRNLWKKGNTLSVTYDNLYMH EECCCCEEEECCCCCCCEEECCCCCCCCHHHCCCCEEEEEHHHHCCCCEEEEEECCEEEE SFPLYSEAVGSESEFVVPTQFSHNLTLSYGIQNGRYNISFECRNLTNEKLYDNFSLQKAG CCCCHHHHCCCCCCEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCHHHCCCCHHHCC RAFYGKVRVYFGN CEEEEEEEEEECC >Mature Secondary Structure MMMKKIRGLFLSFLLLLISISAFSQHKTMISGKVLSTEKTTVDFATVYLKGTNYGGTTNE CCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCEEEEEEEEEEECCCCCCCCC EGIYHLQAPAGEYTLVVSAIGYKTVEKPVKLMRGERTKMNVVISPQATELDEVVVVSNGV CCEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCH TRLKRSAFNAVALDTKALQNSTQNLSEALAQAPGMKIRESGGVGSDMQLMMDGFTGKHIK HHHHHHHCCEEEECHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHEECCCCCCEEE IFIDGVPQEGVGSSFGLNNIPVNYAERIEVYKGVVPVGFGTDAIGGVINIITKKNRNKWF EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEECCCCHHHHHHEEEEEECCCCEEE LDASYSYGSFNTHKSYVNFGQTFRSGLTYEINVFQNYSDNNYYVDTPVKDFTTGAINKKK EEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCHHCCCCCCCHHH IEHVKRFHDTYHNEAVIGKIGFVDKKWADRLMFGFTYSHMYKDIQTGVRQEVVFGGKYRK HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHEEECCCCCC GYSIMPSLDYRKRDFFVRGLDVVLTANYNKNMTNNVDTSSYEYNWRGEMRPLRMPGEQSY CCEECCCCCCCCCCEEEECEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEECCCCCHHH QNTRSDNNNWNGTLTANYRIGKAHTFTFNHVINAFRRSNQSLLNEDSEANAIPKETRKNI HHCCCCCCCCCEEEEEEEEECCEEEEEHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHCC SGLSYRLMPTEHWNLSVFGKYYNQFIAGPVATSSAQDDYIRTTNSVSAMGYGAAGTYFIL CCCEEEEECCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHHH KSLQAKLSYEKAYRLPTNEEMFGDEDLETGDISLRPENSDNVNLNLSYNETFGKHSVYVE HHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCEEEEEE GGLIYRNTKDYIQRNISDLSGGKYGATYVNHGRVETKGYNISVRYGFANWVSVGGNFTQM CCEEEECCHHHHHHHHHHCCCCCCCCEEEECCEEEECCEEEEEEECCEEEEECCCCEEEE NVRDNVKTVTSGTNQESLTYGARMPNLPYQFANSDVTFYWRNLWKKGNTLSVTYDNLYMH EECCCCEEEECCCCCCCEEECCCCCCCCHHHCCCCEEEEEHHHHCCCCEEEEEECCEEEE SFPLYSEAVGSESEFVVPTQFSHNLTLSYGIQNGRYNISFECRNLTNEKLYDNFSLQKAG CCCCHHHHCCCCCCEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCHHHCCCCHHHCC RAFYGKVRVYFGN CEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA