| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is yocR [H]
Identifier: 150009477
GI number: 150009477
Start: 3449734
End: 3451098
Strand: Direct
Name: yocR [H]
Synonym: BDI_2890
Alternate gene names: 150009477
Gene position: 3449734-3451098 (Clockwise)
Preceding gene: 150009469
Following gene: 150009478
Centisome position: 71.7
GC content: 47.18
Gene sequence:
>1365_bases ATGGCAAACAATCGAGTCACATTCGGTAGTAAATTGGGCGTAGTACTAGCTACCGTAGGATGCGCCGTCGGATTGGGAAG CGTATGGCGCTTTCCTTATATGCTAGGAGCGAACGGAGGTGCGGCATTCCTACTGGTCTACATACTTTTCATGATATTTC TAGGCATTCCGGTAATGATAACCGAGTTTTTCATCGGCCGGCATTCCCGCAGCAATACGGTGGGTTCTTTCAAGAAAATG GCTCCCGGTACAAAATGGTGCTGGATTGGGTACAACGGTATCTTGGCCGCGTTTTTGATCTTAAGTTATTACTCGGTCGT CTCCGGTTGGACGCTTGAATATGTTTGGCAAACGCTAAGTGGCCGTTTGTATGGACAGCCGGATATAGACTATACGGCCG ATTTTCAGGATTTCGCTTCCAATGTCTTCCGTCCGATCTTTTGGATGGGCGCTTTTATCGGGTTAACTCACTTCGTGATT GTCTCGGGTGTAGAAAAAGGTATCGAACGGGCCTCTAAGATCATGATGCCGCTTTTATTCTTGATCTTGCTGATCATGTG CGTACGTTCCGTGACCTTACCGAACGCTGAGGCCGGATTGCTTTTCCTTTTCAAGCCAGACTTTAGCAAATTGACTTCCT CAGTGGTCTTGAGCGCACTAGGACAGGCTTTCTTCTCTTTGAGTTTGGGTATGGGCTGCCTGATCACTTACTCCTCTTAC TTCGGGAAAGATACGAATATGCAGGCCACCGCTTGGCAGGTGACAATCATTAATACGCTTGTCGCCGTATTGGCAGGTAT CATGATATTCCCGGCGGTATTCAGTTTCGGCATCACCCCTTCCGCTGGTGCGGAACTCGTGTTTATCACGTTACCGAACG TATTTGGGCAATTACCGCTGAGTGGCTTGTGGTCCTGTATTTTTTATATCTTGCTAGCGATGGCAGCACTGACTTCCACG ATCTCTTTACATGAGGTAGCTACGGCCTACGTTCTTGAGGAGTTCCACATGACACGCAAGAAAGCGGCTTTGATCGTTTC CTTAGGGGTATTTTTCTTAGGTATTTTCAGTTCTCTCTCATTCGGGGTGATGAAAGGATTCACGGTTGGAGGCTTGGCCT TTTTCGATGCGCTGGATTACTTGACCGCCAAGATCATGCTACCGCTGGGAGGTATGCTCACTTGTATTTTCGTAGGTACA CGTGTCGATAAAAAAGTATTGAAAGCCGAGTTGACCAATGAGGGGACTCTTAAGTTCCGTCTTTTCGGCGCTTACGTATT CTTTATGAAATACGTGGCCCCAATCGCCATCGGTATCGTATTCTTGAACGAATTAGGTATCTTGAAATGGATCACCGGTA AATAA
Upstream 100 bases:
>100_bases TTTATACTTTACACGAACAAATTAATTCAAATTATTACTTTTGTTCCCGAAAATAAGAAAATAGGTAACAATTAAAAGCA TAAAAGCAACAATAAATAAT
Downstream 100 bases:
>100_bases TACCGAGAATTCCTTGTCAATAGAAACGGAACTTCTACCTTTGTCGGTGGAAGTTCCACAAATCAAAACATAAGACTATG AAATGGCATGATTTACTTTA
Product: Na+-dependent transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MANNRVTFGSKLGVVLATVGCAVGLGSVWRFPYMLGANGGAAFLLVYILFMIFLGIPVMITEFFIGRHSRSNTVGSFKKM APGTKWCWIGYNGILAAFLILSYYSVVSGWTLEYVWQTLSGRLYGQPDIDYTADFQDFASNVFRPIFWMGAFIGLTHFVI VSGVEKGIERASKIMMPLLFLILLIMCVRSVTLPNAEAGLLFLFKPDFSKLTSSVVLSALGQAFFSLSLGMGCLITYSSY FGKDTNMQATAWQVTIINTLVAVLAGIMIFPAVFSFGITPSAGAELVFITLPNVFGQLPLSGLWSCIFYILLAMAALTST ISLHEVATAYVLEEFHMTRKKAALIVSLGVFFLGIFSSLSFGVMKGFTVGGLAFFDALDYLTAKIMLPLGGMLTCIFVGT RVDKKVLKAELTNEGTLKFRLFGAYVFFMKYVAPIAIGIVFLNELGILKWITGK
Sequences:
>Translated_454_residues MANNRVTFGSKLGVVLATVGCAVGLGSVWRFPYMLGANGGAAFLLVYILFMIFLGIPVMITEFFIGRHSRSNTVGSFKKM APGTKWCWIGYNGILAAFLILSYYSVVSGWTLEYVWQTLSGRLYGQPDIDYTADFQDFASNVFRPIFWMGAFIGLTHFVI VSGVEKGIERASKIMMPLLFLILLIMCVRSVTLPNAEAGLLFLFKPDFSKLTSSVVLSALGQAFFSLSLGMGCLITYSSY FGKDTNMQATAWQVTIINTLVAVLAGIMIFPAVFSFGITPSAGAELVFITLPNVFGQLPLSGLWSCIFYILLAMAALTST ISLHEVATAYVLEEFHMTRKKAALIVSLGVFFLGIFSSLSFGVMKGFTVGGLAFFDALDYLTAKIMLPLGGMLTCIFVGT RVDKKVLKAELTNEGTLKFRLFGAYVFFMKYVAPIAIGIVFLNELGILKWITGK >Mature_453_residues ANNRVTFGSKLGVVLATVGCAVGLGSVWRFPYMLGANGGAAFLLVYILFMIFLGIPVMITEFFIGRHSRSNTVGSFKKMA PGTKWCWIGYNGILAAFLILSYYSVVSGWTLEYVWQTLSGRLYGQPDIDYTADFQDFASNVFRPIFWMGAFIGLTHFVIV SGVEKGIERASKIMMPLLFLILLIMCVRSVTLPNAEAGLLFLFKPDFSKLTSSVVLSALGQAFFSLSLGMGCLITYSSYF GKDTNMQATAWQVTIINTLVAVLAGIMIFPAVFSFGITPSAGAELVFITLPNVFGQLPLSGLWSCIFYILLAMAALTSTI SLHEVATAYVLEEFHMTRKKAALIVSLGVFFLGIFSSLSFGVMKGFTVGGLAFFDALDYLTAKIMLPLGGMLTCIFVGTR VDKKVLKAELTNEGTLKFRLFGAYVFFMKYVAPIAIGIVFLNELGILKWITGK
Specific function: Putative sodium-dependent transporter [H]
COG id: COG0733
COG function: function code R; Na+-dependent transporters of the SNF family
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]
Homologues:
Organism=Homo sapiens, GI4507043, Length=410, Percent_Identity=29.5121951219512, Blast_Score=152, Evalue=5e-37, Organism=Homo sapiens, GI188528618, Length=434, Percent_Identity=29.0322580645161, Blast_Score=149, Evalue=7e-36, Organism=Homo sapiens, GI4507041, Length=451, Percent_Identity=27.4944567627494, Blast_Score=141, Evalue=1e-33, Organism=Homo sapiens, GI21361581, Length=432, Percent_Identity=28.2407407407407, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI289191351, Length=413, Percent_Identity=27.3607748184019, Blast_Score=132, Evalue=6e-31, Organism=Homo sapiens, GI4557046, Length=413, Percent_Identity=27.3607748184019, Blast_Score=132, Evalue=6e-31, Organism=Homo sapiens, GI289191377, Length=413, Percent_Identity=27.3607748184019, Blast_Score=132, Evalue=6e-31, Organism=Homo sapiens, GI171184408, Length=443, Percent_Identity=26.86230248307, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI171184406, Length=443, Percent_Identity=26.86230248307, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI171184404, Length=443, Percent_Identity=26.86230248307, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI194018524, Length=308, Percent_Identity=29.8701298701299, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI92859670, Length=462, Percent_Identity=26.8398268398268, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI58219014, Length=307, Percent_Identity=29.6416938110749, Blast_Score=123, Evalue=3e-28, Organism=Homo sapiens, GI7657587, Length=452, Percent_Identity=26.7699115044248, Blast_Score=122, Evalue=7e-28, Organism=Homo sapiens, GI51468073, Length=442, Percent_Identity=26.4705882352941, Blast_Score=122, Evalue=7e-28, Organism=Homo sapiens, GI33354281, Length=305, Percent_Identity=29.5081967213115, Blast_Score=119, Evalue=9e-27, Organism=Homo sapiens, GI11181770, Length=309, Percent_Identity=26.537216828479, Blast_Score=114, Evalue=3e-25, Organism=Homo sapiens, GI134304856, Length=453, Percent_Identity=29.5805739514349, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI197276623, Length=353, Percent_Identity=26.3456090651558, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI54607094, Length=353, Percent_Identity=26.3456090651558, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI5032097, Length=357, Percent_Identity=28.0112044817927, Blast_Score=99, Evalue=9e-21, Organism=Homo sapiens, GI12408638, Length=285, Percent_Identity=25.6140350877193, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI21361693, Length=123, Percent_Identity=36.5853658536585, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI218563756, Length=349, Percent_Identity=26.9340974212034, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI67782317, Length=420, Percent_Identity=25.952380952381, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI67782313, Length=420, Percent_Identity=25.952380952381, Blast_Score=83, Evalue=5e-16, Organism=Homo sapiens, GI300360519, Length=236, Percent_Identity=30.5084745762712, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI197276625, Length=123, Percent_Identity=35.7723577235772, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI289191353, Length=206, Percent_Identity=28.1553398058252, Blast_Score=76, Evalue=8e-14, Organism=Homo sapiens, GI55749589, Length=293, Percent_Identity=25.2559726962457, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI6005715, Length=218, Percent_Identity=29.3577981651376, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI67782315, Length=104, Percent_Identity=38.4615384615385, Blast_Score=70, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17555248, Length=408, Percent_Identity=27.4509803921569, Blast_Score=129, Evalue=5e-30, Organism=Caenorhabditis elegans, GI17554804, Length=463, Percent_Identity=27.4298056155508, Blast_Score=128, Evalue=7e-30, Organism=Caenorhabditis elegans, GI133952791, Length=467, Percent_Identity=26.9807280513919, Blast_Score=124, Evalue=8e-29, Organism=Caenorhabditis elegans, GI71995588, Length=411, Percent_Identity=26.2773722627737, Blast_Score=118, Evalue=7e-27, Organism=Caenorhabditis elegans, GI25146584, Length=408, Percent_Identity=24.2647058823529, Blast_Score=109, Evalue=3e-24, Organism=Caenorhabditis elegans, GI71998244, Length=346, Percent_Identity=26.878612716763, Blast_Score=82, Evalue=6e-16, Organism=Caenorhabditis elegans, GI212642127, Length=298, Percent_Identity=25.503355704698, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17569475, Length=410, Percent_Identity=23.4146341463415, Blast_Score=76, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17542050, Length=111, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17535731, Length=108, Percent_Identity=34.2592592592593, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI24762620, Length=408, Percent_Identity=29.1666666666667, Blast_Score=142, Evalue=6e-34, Organism=Drosophila melanogaster, GI17136952, Length=425, Percent_Identity=25.6470588235294, Blast_Score=139, Evalue=4e-33, Organism=Drosophila melanogaster, GI281364394, Length=426, Percent_Identity=25.3521126760563, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI28574704, Length=426, Percent_Identity=25.3521126760563, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI17136950, Length=426, Percent_Identity=25.3521126760563, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI28574702, Length=426, Percent_Identity=25.3521126760563, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI24654186, Length=465, Percent_Identity=25.1612903225806, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI45550877, Length=442, Percent_Identity=27.8280542986425, Blast_Score=129, Evalue=3e-30, Organism=Drosophila melanogaster, GI45551183, Length=413, Percent_Identity=27.1186440677966, Blast_Score=128, Evalue=9e-30, Organism=Drosophila melanogaster, GI281364136, Length=469, Percent_Identity=26.226012793177, Blast_Score=123, Evalue=3e-28, Organism=Drosophila melanogaster, GI281365034, Length=415, Percent_Identity=25.3012048192771, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI24582567, Length=431, Percent_Identity=26.9141531322506, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI221329674, Length=369, Percent_Identity=27.9132791327913, Blast_Score=118, Evalue=9e-27, Organism=Drosophila melanogaster, GI24639514, Length=369, Percent_Identity=27.9132791327913, Blast_Score=118, Evalue=1e-26, Organism=Drosophila melanogaster, GI24639516, Length=297, Percent_Identity=30.3030303030303, Blast_Score=116, Evalue=4e-26, Organism=Drosophila melanogaster, GI24652942, Length=403, Percent_Identity=25.3101736972705, Blast_Score=111, Evalue=9e-25, Organism=Drosophila melanogaster, GI45551088, Length=403, Percent_Identity=25.3101736972705, Blast_Score=111, Evalue=9e-25, Organism=Drosophila melanogaster, GI19921352, Length=421, Percent_Identity=24.2280285035629, Blast_Score=111, Evalue=9e-25, Organism=Drosophila melanogaster, GI24584353, Length=421, Percent_Identity=24.2280285035629, Blast_Score=111, Evalue=9e-25, Organism=Drosophila melanogaster, GI24661428, Length=395, Percent_Identity=25.3164556962025, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI19921936, Length=433, Percent_Identity=24.0184757505774, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI24655079, Length=307, Percent_Identity=28.0130293159609, Blast_Score=108, Evalue=6e-24, Organism=Drosophila melanogaster, GI281363702, Length=418, Percent_Identity=24.8803827751196, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI281363700, Length=334, Percent_Identity=27.2455089820359, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI24639853, Length=421, Percent_Identity=25.1781472684086, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24582569, Length=392, Percent_Identity=25, Blast_Score=83, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000175 [H]
Pfam domain/function: PF00209 SNF [H]
EC number: NA
Molecular weight: Translated: 49649; Mature: 49518
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANNRVTFGSKLGVVLATVGCAVGLGSVWRFPYMLGANGGAAFLLVYILFMIFLGIPVMI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHH TEFFIGRHSRSNTVGSFKKMAPGTKWCWIGYNGILAAFLILSYYSVVSGWTLEYVWQTLS HHHHHHCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC GRLYGQPDIDYTADFQDFASNVFRPIFWMGAFIGLTHFVIVSGVEKGIERASKIMMPLLF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LILLIMCVRSVTLPNAEAGLLFLFKPDFSKLTSSVVLSALGQAFFSLSLGMGCLITYSSY HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH FGKDTNMQATAWQVTIINTLVAVLAGIMIFPAVFSFGITPSAGAELVFITLPNVFGQLPL CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHCCCH SGLWSCIFYILLAMAALTSTISLHEVATAYVLEEFHMTRKKAALIVSLGVFFLGIFSSLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGVMKGFTVGGLAFFDALDYLTAKIMLPLGGMLTCIFVGTRVDKKVLKAELTNEGTLKFR HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEEH LFGAYVFFMKYVAPIAIGIVFLNELGILKWITGK HHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCC >Mature Secondary Structure ANNRVTFGSKLGVVLATVGCAVGLGSVWRFPYMLGANGGAAFLLVYILFMIFLGIPVMI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHH TEFFIGRHSRSNTVGSFKKMAPGTKWCWIGYNGILAAFLILSYYSVVSGWTLEYVWQTLS HHHHHHCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC GRLYGQPDIDYTADFQDFASNVFRPIFWMGAFIGLTHFVIVSGVEKGIERASKIMMPLLF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LILLIMCVRSVTLPNAEAGLLFLFKPDFSKLTSSVVLSALGQAFFSLSLGMGCLITYSSY HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH FGKDTNMQATAWQVTIINTLVAVLAGIMIFPAVFSFGITPSAGAELVFITLPNVFGQLPL CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHCCCH SGLWSCIFYILLAMAALTSTISLHEVATAYVLEEFHMTRKKAALIVSLGVFFLGIFSSLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGVMKGFTVGGLAFFDALDYLTAKIMLPLGGMLTCIFVGTRVDKKVLKAELTNEGTLKFR HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEEH LFGAYVFFMKYVAPIAIGIVFLNELGILKWITGK HHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]