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The map label for this gene is dapB [H]

Identifier: 150009439

GI number: 150009439

Start: 3397186

End: 3397902

Strand: Direct

Name: dapB [H]

Synonym: BDI_2847

Alternate gene names: 150009439

Gene position: 3397186-3397902 (Clockwise)

Preceding gene: 150009437

Following gene: 150009440

Centisome position: 70.61

GC content: 49.23

Gene sequence:

>717_bases
ATGAAAATTGCACTTATAGGTTACGGGAAAATGGGCAAAACGATCGAGCAGATCGCCATCCAAAGAGGACATCAAATTGT
TTCCATCATAGATATCAATAACGCTGAGGATATATATTCAGAAGCGTTCAAGAGCGCCGACGCGGCGATTGAGTTTACTA
CCCCGGCTACCGCTTTCAATAACTATATGAAATGTTTCGAGGTAGGCGTGCCGGTCGTATCGGGTACTACCGGATGGCTG
GACCGTATCGGCGAGATCAAGGAGAAATGCGAGAAAGAGGGCAAAACCTTCTTCTACGCCTCCAACTTCAGCATCGGCGT
AAATATCTTCTTCGCCATGAATAAGTATCTGGCGAAAATCATGAACAACTTCCCCTCCTACGACGTTAAGATGACGGAAG
TCCACCATATCCACAAGCTGGACGCACCCAGTGGAACGGCTATCACGTTGGCCGAAGGTATCTTGGAAAACATCGATCGT
AAAGACCGCTGGACCTTAGAGAACGCCGAGAGCGTGACCGACCTGCCGATCCACGCCATCCGTGAGGGTGAGGTTCCGGG
TATCCACGAGATCACGTATGAGTCGGACGTAGATACGATCAGTATCAAGCATGATGCCAAGAGCCGTGCCGGATTTGCGC
TAGGCGCCGTAATAGCGGCAGAGTTTACCGCCGGAAAGAAAGGTTTCCTAGGCATGAATGACTTATTCAAATTCTAA

Upstream 100 bases:

>100_bases
AACATAGTGTAATAAACGTTCCATATTCTTTCAGAGTTAAGATTTTGGATTCAAATGTAATTCATTTTCTGTATATTTGC
GACATTAATTGAATTAAAGT

Downstream 100 bases:

>100_bases
ACGTATTAGCTAAAAGATGAAGAAGTTCACGAAAAAACAATGGATCAAGTTTAGTATAGCGGCCGTATTATACACGTTGT
TCGCTATCTGGATGCAAAAC

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKIALIGYGKMGKTIEQIAIQRGHQIVSIIDINNAEDIYSEAFKSADAAIEFTTPATAFNNYMKCFEVGVPVVSGTTGWL
DRIGEIKEKCEKEGKTFFYASNFSIGVNIFFAMNKYLAKIMNNFPSYDVKMTEVHHIHKLDAPSGTAITLAEGILENIDR
KDRWTLENAESVTDLPIHAIREGEVPGIHEITYESDVDTISIKHDAKSRAGFALGAVIAAEFTAGKKGFLGMNDLFKF

Sequences:

>Translated_238_residues
MKIALIGYGKMGKTIEQIAIQRGHQIVSIIDINNAEDIYSEAFKSADAAIEFTTPATAFNNYMKCFEVGVPVVSGTTGWL
DRIGEIKEKCEKEGKTFFYASNFSIGVNIFFAMNKYLAKIMNNFPSYDVKMTEVHHIHKLDAPSGTAITLAEGILENIDR
KDRWTLENAESVTDLPIHAIREGEVPGIHEITYESDVDTISIKHDAKSRAGFALGAVIAAEFTAGKKGFLGMNDLFKF
>Mature_238_residues
MKIALIGYGKMGKTIEQIAIQRGHQIVSIIDINNAEDIYSEAFKSADAAIEFTTPATAFNNYMKCFEVGVPVVSGTTGWL
DRIGEIKEKCEKEGKTFFYASNFSIGVNIFFAMNKYLAKIMNNFPSYDVKMTEVHHIHKLDAPSGTAITLAEGILENIDR
KDRWTLENAESVTDLPIHAIREGEVPGIHEITYESDVDTISIKHDAKSRAGFALGAVIAAEFTAGKKGFLGMNDLFKF

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=268, Percent_Identity=28.3582089552239, Blast_Score=98, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 26324; Mature: 26324

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIALIGYGKMGKTIEQIAIQRGHQIVSIIDINNAEDIYSEAFKSADAAIEFTTPATAFN
CEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCHHHHH
NYMKCFEVGVPVVSGTTGWLDRIGEIKEKCEKEGKTFFYASNFSIGVNIFFAMNKYLAKI
HHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEHHHHHHHHHHHH
MNNFPSYDVKMTEVHHIHKLDAPSGTAITLAEGILENIDRKDRWTLENAESVTDLPIHAI
HHCCCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHC
REGEVPGIHEITYESDVDTISIKHDAKSRAGFALGAVIAAEFTAGKKGFLGMNDLFKF
CCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MKIALIGYGKMGKTIEQIAIQRGHQIVSIIDINNAEDIYSEAFKSADAAIEFTTPATAFN
CEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCHHHHH
NYMKCFEVGVPVVSGTTGWLDRIGEIKEKCEKEGKTFFYASNFSIGVNIFFAMNKYLAKI
HHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEHHHHHHHHHHHH
MNNFPSYDVKMTEVHHIHKLDAPSGTAITLAEGILENIDRKDRWTLENAESVTDLPIHAI
HHCCCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHC
REGEVPGIHEITYESDVDTISIKHDAKSRAGFALGAVIAAEFTAGKKGFLGMNDLFKF
CCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA