| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is lepB [H]
Identifier: 150009440
GI number: 150009440
Start: 3397919
End: 3399316
Strand: Direct
Name: lepB [H]
Synonym: BDI_2848
Alternate gene names: 150009440
Gene position: 3397919-3399316 (Clockwise)
Preceding gene: 150009439
Following gene: 150009441
Centisome position: 70.62
GC content: 49.71
Gene sequence:
>1398_bases ATGAAGAAGTTCACGAAAAAACAATGGATCAAGTTTAGTATAGCGGCCGTATTATACACGTTGTTCGCTATCTGGATGCA AAACTTATGGTTACTGCTGGGATTAATCGTCCTAGTCGATATATTCTTGACGCACTACATCCCTTGGGGAGCTTGGAAAC GGTCTAAGAACCCGGCGGTACGCAACGTATTGGAATGGGTGGACGATATCGTATTCGCACTGGTAGCCGTTTATTTCATC AATTTGTTCGTCTTCCAGAACTATCAGATACCGAGTTCTTCCCTAGAGAAATCCTTGCTGGTAGGAGATTACCTGTTCGT CAGCAAATTAAGTTACGGCCCTCGCATTCCGAACACTCCGATCTCCTTCCCGTTGGTACAAAATACGTTGCCGATCTTTA ACTGCAAATCGTATCTGGATTGGCCGGAATGGGGCTACAAACGGGTGAAAGGTTTGGGCCACGTGAAACGTAATGATATC GTAGTGTTCAACTTCCCCGCAGGCGACACGATCGCCGTGAAAGTGCAAAACCCGGATTACTACTCCTTGGTCGAGGAGTA CGGACGGGAACGTATCTTATTGGATAAGGCCACGTTCGGCGAGGTAATGTACCGCCCGGTCGACAAACGGGAGAATTACG TGAAACGTTGTATCGGTATGCCGGGTGATACGCTCCAACTCATAGACAACCAAGTGTACATAGACGGTAAACCCGCCGAG AACCCGAAAGATATGCAGTTCAACTACTTCATCGAAACAGACGGTTCCCCGATCACAGAGGAGCAATTCCGTTTGATGGA CGTAAGCAAGGATGACCGTATGCTGGCCTCCAGCGGCGGTTATTACCAAAACCTATTGTCATACCTAGGCTTTACGCCTA ACGCGAAGGGACAGTACAACCCGGTATATCGCCTGCCACTCACGAAAAAGGCCTTGGCGATAGCGGAGAAGTTACCTACC GTGAAGAAGGTTATCATCGAGCCGGAGACGTTGGGCGGCCCTACCTATCCGGTCGGATACAATACTGGCTGGACCCGTGA TAACTTCGGGCCGCTTTGGATCCCGAAGAAAGGGGCTACCATCCCGTTGGACGAACGTAATCTGGCGTTGTACAGCCGTT GTATCAAGAATTACGAGAACAACACCTTGGAAGTGAAGGACGGCAAGGTCTACATCAACGGCAAGCCCGAGACTTCCTAT ACGTTTAAATACGATTATTACTGGATGATGGGCGATAACCGCCATAATAGCGCAGATAGCCGCTCATGGGGTTTCGTACC CGAGGATCACATTGTCGGCAAGCCGATCTTGGTTTGGCTATCCTTGGACAAGGATCGCAGCCTGTTCGACGGTGGTATCC GTTGGAACCGCCTGTTCCGCTGGGTTCATCCGGATTAA
Upstream 100 bases:
>100_bases TTTGCGCTAGGCGCCGTAATAGCGGCAGAGTTTACCGCCGGAAAGAAAGGTTTCCTAGGCATGAATGACTTATTCAAATT CTAAACGTATTAGCTAAAAG
Downstream 100 bases:
>100_bases GAGGTGAAAACTTCGTATTATGACAATCCAACGATTCCTGATAGTTCTCATGAAATGGCTGGCAGCTTTCGCGCTAGCCT CGGGGATCGTCATGCTCATA
Product: signal peptidase I
Products: NA
Alternate protein names: SPase I; Leader peptidase I [H]
Number of amino acids: Translated: 465; Mature: 465
Protein sequence:
>465_residues MKKFTKKQWIKFSIAAVLYTLFAIWMQNLWLLLGLIVLVDIFLTHYIPWGAWKRSKNPAVRNVLEWVDDIVFALVAVYFI NLFVFQNYQIPSSSLEKSLLVGDYLFVSKLSYGPRIPNTPISFPLVQNTLPIFNCKSYLDWPEWGYKRVKGLGHVKRNDI VVFNFPAGDTIAVKVQNPDYYSLVEEYGRERILLDKATFGEVMYRPVDKRENYVKRCIGMPGDTLQLIDNQVYIDGKPAE NPKDMQFNYFIETDGSPITEEQFRLMDVSKDDRMLASSGGYYQNLLSYLGFTPNAKGQYNPVYRLPLTKKALAIAEKLPT VKKVIIEPETLGGPTYPVGYNTGWTRDNFGPLWIPKKGATIPLDERNLALYSRCIKNYENNTLEVKDGKVYINGKPETSY TFKYDYYWMMGDNRHNSADSRSWGFVPEDHIVGKPILVWLSLDKDRSLFDGGIRWNRLFRWVHPD
Sequences:
>Translated_465_residues MKKFTKKQWIKFSIAAVLYTLFAIWMQNLWLLLGLIVLVDIFLTHYIPWGAWKRSKNPAVRNVLEWVDDIVFALVAVYFI NLFVFQNYQIPSSSLEKSLLVGDYLFVSKLSYGPRIPNTPISFPLVQNTLPIFNCKSYLDWPEWGYKRVKGLGHVKRNDI VVFNFPAGDTIAVKVQNPDYYSLVEEYGRERILLDKATFGEVMYRPVDKRENYVKRCIGMPGDTLQLIDNQVYIDGKPAE NPKDMQFNYFIETDGSPITEEQFRLMDVSKDDRMLASSGGYYQNLLSYLGFTPNAKGQYNPVYRLPLTKKALAIAEKLPT VKKVIIEPETLGGPTYPVGYNTGWTRDNFGPLWIPKKGATIPLDERNLALYSRCIKNYENNTLEVKDGKVYINGKPETSY TFKYDYYWMMGDNRHNSADSRSWGFVPEDHIVGKPILVWLSLDKDRSLFDGGIRWNRLFRWVHPD >Mature_465_residues MKKFTKKQWIKFSIAAVLYTLFAIWMQNLWLLLGLIVLVDIFLTHYIPWGAWKRSKNPAVRNVLEWVDDIVFALVAVYFI NLFVFQNYQIPSSSLEKSLLVGDYLFVSKLSYGPRIPNTPISFPLVQNTLPIFNCKSYLDWPEWGYKRVKGLGHVKRNDI VVFNFPAGDTIAVKVQNPDYYSLVEEYGRERILLDKATFGEVMYRPVDKRENYVKRCIGMPGDTLQLIDNQVYIDGKPAE NPKDMQFNYFIETDGSPITEEQFRLMDVSKDDRMLASSGGYYQNLLSYLGFTPNAKGQYNPVYRLPLTKKALAIAEKLPT VKKVIIEPETLGGPTYPVGYNTGWTRDNFGPLWIPKKGATIPLDERNLALYSRCIKNYENNTLEVKDGKVYINGKPETSY TFKYDYYWMMGDNRHNSADSRSWGFVPEDHIVGKPILVWLSLDKDRSLFDGGIRWNRLFRWVHPD
Specific function: Unknown
COG id: COG0681
COG function: function code U; Signal peptidase I
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S26 family [H]
Homologues:
Organism=Escherichia coli, GI1788921, Length=52, Percent_Identity=53.8461538461538, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000223 - InterPro: IPR019758 - InterPro: IPR019757 - InterPro: IPR019756 - InterPro: IPR019759 - InterPro: IPR015927 - InterPro: IPR011056 - InterPro: IPR019533 - InterPro: IPR019766 [H]
Pfam domain/function: PF00717 Peptidase_S24; PF10502 Peptidase_S26 [H]
EC number: =3.4.21.89 [H]
Molecular weight: Translated: 53908; Mature: 53908
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: PS00761 SPASE_I_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFTKKQWIKFSIAAVLYTLFAIWMQNLWLLLGLIVLVDIFLTHYIPWGAWKRSKNPAV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH RNVLEWVDDIVFALVAVYFINLFVFQNYQIPSSSLEKSLLVGDYLFVSKLSYGPRIPNTP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ISFPLVQNTLPIFNCKSYLDWPEWGYKRVKGLGHVKRNDIVVFNFPAGDTIAVKVQNPDY CCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCH YSLVEEYGRERILLDKATFGEVMYRPVDKRENYVKRCIGMPGDTLQLIDNQVYIDGKPAE HHHHHHCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCEEEECCCCCC NPKDMQFNYFIETDGSPITEEQFRLMDVSKDDRMLASSGGYYQNLLSYLGFTPNAKGQYN CCCCCEEEEEEECCCCCCCHHHHEEECCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC PVYRLPLTKKALAIAEKLPTVKKVIIEPETLGGPTYPVGYNTGWTRDNFGPLWIPKKGAT CEEECCCHHHHHHHHHHCCHHHHEEECCHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCC IPLDERNLALYSRCIKNYENNTLEVKDGKVYINGKPETSYTFKYDYYWMMGDNRHNSADS CCCCCCCHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCEEEEEEEEEEECCCCCCCCCC RSWGFVPEDHIVGKPILVWLSLDKDRSLFDGGIRWNRLFRWVHPD CCCCCCCCCCCCCCEEEEEEEECCCCCHHCCCCCHHHEEEECCCC >Mature Secondary Structure MKKFTKKQWIKFSIAAVLYTLFAIWMQNLWLLLGLIVLVDIFLTHYIPWGAWKRSKNPAV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH RNVLEWVDDIVFALVAVYFINLFVFQNYQIPSSSLEKSLLVGDYLFVSKLSYGPRIPNTP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ISFPLVQNTLPIFNCKSYLDWPEWGYKRVKGLGHVKRNDIVVFNFPAGDTIAVKVQNPDY CCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCH YSLVEEYGRERILLDKATFGEVMYRPVDKRENYVKRCIGMPGDTLQLIDNQVYIDGKPAE HHHHHHCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCEEEECCCCCC NPKDMQFNYFIETDGSPITEEQFRLMDVSKDDRMLASSGGYYQNLLSYLGFTPNAKGQYN CCCCCEEEEEEECCCCCCCHHHHEEECCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC PVYRLPLTKKALAIAEKLPTVKKVIIEPETLGGPTYPVGYNTGWTRDNFGPLWIPKKGAT CEEECCCHHHHHHHHHHCCHHHHEEECCHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCC IPLDERNLALYSRCIKNYENNTLEVKDGKVYINGKPETSYTFKYDYYWMMGDNRHNSADS CCCCCCCHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCEEEEEEEEEEECCCCCCCCCC RSWGFVPEDHIVGKPILVWLSLDKDRSLFDGGIRWNRLFRWVHPD CCCCCCCCCCCCCCEEEEEEEECCCCCHHCCCCCHHHEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10993077 [H]