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The map label for this gene is fecI [C]

Identifier: 150008940

GI number: 150008940

Start: 2753022

End: 2753603

Strand: Direct

Name: fecI [C]

Synonym: BDI_2336

Alternate gene names: 150008940

Gene position: 2753022-2753603 (Clockwise)

Preceding gene: 150008934

Following gene: 150008943

Centisome position: 57.22

GC content: 39.69

Gene sequence:

>582_bases
ATGGAAAGAAATCCAACAATGACTGATATCGATTTCCTTTTACGGCAAATCACGACCGAGGATAATAAGCTCTCCTTCCA
ACGTTTATTTGAGTTATATTATCCGGCTCTTTGCATATATACCAAACGTTTTATCTCTGACCGGGAAACGAGAGAAGATA
TCGTACAGGAAGTTTTTTCCTCCATCTGGGAAAATCGTAAACGCATCGTAATAAGAACTTCCGCGCGCAATTATCTCATC
ACAGCTACCAAGAACCACAGTCTCAACTATCTGCAACGCAATCACGAAGAATATGTAGACCAATTCTCTCAAGAGCAAAT
CCCTATCTATGCGGAAAGTGGCGAGGAGCTTTATACTTGGGAAGAATTACAAACCCTACTTCGAGAGGCACTTGCTAAAT
TACCTGAAAACTATCGATATGTATTCGAGAAGAATCGCTTTGAGAATAAGAGTTACGGCGAGATCGCGGAGGATATGCAA
ATATCCATACGGACAGTAGAAAGATATAAAAATAAGGCGATTGAAATATTAAAGACAGAGTTGAAAGACTACTTGCCCCT
GTTCATTGGTTGGCTATTTTAA

Upstream 100 bases:

>100_bases
TATATGTGTGGGCCCTCCTCACCAATTGCACAAAAAGCAAGGATTTTAGCTTGTGAAACAAAGGGGAATATATTCTAAAA
ATATATACATTTGTCTCATT

Downstream 100 bases:

>100_bases
CAAAAACTTCCGGAAATACCCACATACCTCCGGAAGTTTCTCGTCCTCAATTTATTGTTGCTCCAACCAAACCTTCACCC
CTTCAAGTAAGATCTGGTTC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-H Factor; ECF-Type RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase; ECF Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MERNPTMTDIDFLLRQITTEDNKLSFQRLFELYYPALCIYTKRFISDRETREDIVQEVFSSIWENRKRIVIRTSARNYLI
TATKNHSLNYLQRNHEEYVDQFSQEQIPIYAESGEELYTWEELQTLLREALAKLPENYRYVFEKNRFENKSYGEIAEDMQ
ISIRTVERYKNKAIEILKTELKDYLPLFIGWLF

Sequences:

>Translated_193_residues
MERNPTMTDIDFLLRQITTEDNKLSFQRLFELYYPALCIYTKRFISDRETREDIVQEVFSSIWENRKRIVIRTSARNYLI
TATKNHSLNYLQRNHEEYVDQFSQEQIPIYAESGEELYTWEELQTLLREALAKLPENYRYVFEKNRFENKSYGEIAEDMQ
ISIRTVERYKNKAIEILKTELKDYLPLFIGWLF
>Mature_193_residues
MERNPTMTDIDFLLRQITTEDNKLSFQRLFELYYPALCIYTKRFISDRETREDIVQEVFSSIWENRKRIVIRTSARNYLI
TATKNHSLNYLQRNHEEYVDQFSQEQIPIYAESGEELYTWEELQTLLREALAKLPENYRYVFEKNRFENKSYGEIAEDMQ
ISIRTVERYKNKAIEILKTELKDYLPLFIGWLF

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23470; Mature: 23470

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERNPTMTDIDFLLRQITTEDNKLSFQRLFELYYPALCIYTKRFISDRETREDIVQEVFS
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SIWENRKRIVIRTSARNYLITATKNHSLNYLQRNHEEYVDQFSQEQIPIYAESGEELYTW
HHHCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCEECH
EELQTLLREALAKLPENYRYVFEKNRFENKSYGEIAEDMQISIRTVERYKNKAIEILKTE
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKDYLPLFIGWLF
HHHHHHHHHHHHC
>Mature Secondary Structure
MERNPTMTDIDFLLRQITTEDNKLSFQRLFELYYPALCIYTKRFISDRETREDIVQEVFS
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SIWENRKRIVIRTSARNYLITATKNHSLNYLQRNHEEYVDQFSQEQIPIYAESGEELYTW
HHHCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCEECH
EELQTLLREALAKLPENYRYVFEKNRFENKSYGEIAEDMQISIRTVERYKNKAIEILKTE
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKDYLPLFIGWLF
HHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA