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The map label for this gene is yggB [C]

Identifier: 150008857

GI number: 150008857

Start: 2634954

End: 2636813

Strand: Direct

Name: yggB [C]

Synonym: BDI_2247

Alternate gene names: 150008857

Gene position: 2634954-2636813 (Clockwise)

Preceding gene: 150008856

Following gene: 150008858

Centisome position: 54.77

GC content: 45.91

Gene sequence:

>1860_bases
ATGAAACAATTTTTATTGCGATTAGTGATCTTGGCAGGAATCAGTTTCCTGCCAACGGTGTCCAACGCCCAATTAAGGGA
AAAGGCCGAAGAACTATTGTCTACGACATTAGGCAATGATCCGGAGGAACCAGTTACCCCAACCGATACGCTTTCGCTCG
ATGAGCAGCACCGGAAGGATTCCATCAAGATGCAGGAGCTAGCCCTCCAGTTGCAAGAGATGAAACTAAACGAGATCTTA
CTGAAAGACGAGCTGGAAAGCACGAAAAACAGCAACGCTACCGCCGACTCCCTAAAAAGGTCCGAGCAACGAAACCGTAT
CGATTCCCTTCGGGCACTGACTCCCGGCGTACCTGTAGTCGTGGAGGGGGATACCTTATTTCACCTTTACGCCAAGCGCG
GAGGCCGCACCCCGGTTGACCGGGCTGAGGACATCCTCAATATCATGGTAAAGATCGGGACCTCGCATTCCTTGAAGAAG
GATTCCATCTATATCTATGACAGCGAATACGTAACGGATATCATGTACGGAGACAAGGTTATCCTAAGTATCACCGATCA
AGATGCCCTATGGCAAAATCTCAGTCGTATAGCCCTCGCTGAACAATATCAACCGATTATCCAAAACAAGATACAAGAGT
TAAGGGAGCAACATAGTATCTTGCAGATAGCGAAACGGGTATTATTGTTCATCCTCGTAATTATCATCCAATATTTCCTG
TTTAAGCTGACCAACTATCTGTTTAAGAAGCTACGCAGGAAAATTATCTGGTTAAAGCAGAACCGACTCAGATCTATTAC
CATCCGGGATTATGAATTTCTCAACACACATCGCCAAGGACGTGTATTGATGTTTTTCACCAACGTAATACGATGGATCG
TGTTACTAATCCAATTAACCATCAGTGTACCGATCCTTTTCGCTATCTTCCCGCAAACAGAAGATCTAGCCTTGAAGATA
TTCTCCTATTTGTTGGAGCCGGTAAAGATGATCTTTAAATCGGTAGCCTCCTATATTCCGAACTTGTTTATCATCTTGGT
GATCTATTACTGCATCAAATACATCGTAAAAGGAATCCAATACATAGCCAACGAGATAGAGAGCGAGAACCTGAAAATAT
CAGGTTTTTACCCGGATTGGGCGCAACCGACGTTTAATATCATCCGTTTCCTGCTATACGCCTTTATGATCGCCATGATC
TATCCTTATCTGCCGGGATCGGACTCGGGGGTATTTCAAGGCATATCCGTATTTGTCGGTTTGATCATATCGTTGGGTTC
CAGTACGGTGATCGGAAATATCATCGCAGGGCTGGTCATTACTTATATGAGGCCCTTTAAATTGGGTGACCGTATCCAAC
TAAACGAGACGACTGGCAACGTGATCGAGAAGACTCCGTTTGTAACCCGTTTACGTACCCCTAAGAATGAGGTAGTGACC
ATCCCGAACTCCTTTATCATGTCCTCCCATACAACAAATTATAGCGTATCCGCACGGCAATACGGATTAATCATCCACAG
CACGGTTACGATCGGCTACGACGTACCTTGGCGGCAAGTTCATCAATTATTGATTAATGCCGCCCGCCAGACCACCGGGG
TATTGCCAGAGCCGAAGCCTTTCGTATTGGAGACCGAACTAAGCGATTACTATCCCTGTTATCAAATCAACGCTTATATA
AAGGACGCCGATAAACTCGGAGATATCTATTCCGACCTGCATCAAAACATACAGGACGTATTCAATGAGGCTGGCGTAGA
GATCATGTCACCGCACTATTTCGCCGGACGAGACGGAAGCGCTTCCACGATCCCGACCGCTCCCTATCCGGATGACTGGG
TAGAGCCTTCCAAGAAATAA

Upstream 100 bases:

>100_bases
CAACGAAAGGGAAGGAACAACTCTTCACCTACGTAAGACAATGGCTAAATACTGGCTGGAACATCTTCCGGCCGGTGGTA
AATAGTTAATCCACGATTCG

Downstream 100 bases:

>100_bases
ATATTTCACGGTAAATAGTTAAAAATGATCCCTCACGAAACAAATCGTGGGGGATTTTATGTTATATGTCCAAACGTCAC
TAATAAAATAAATAATGGTA

Product: putative mechano-sensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 619; Mature: 619

Protein sequence:

>619_residues
MKQFLLRLVILAGISFLPTVSNAQLREKAEELLSTTLGNDPEEPVTPTDTLSLDEQHRKDSIKMQELALQLQEMKLNEIL
LKDELESTKNSNATADSLKRSEQRNRIDSLRALTPGVPVVVEGDTLFHLYAKRGGRTPVDRAEDILNIMVKIGTSHSLKK
DSIYIYDSEYVTDIMYGDKVILSITDQDALWQNLSRIALAEQYQPIIQNKIQELREQHSILQIAKRVLLFILVIIIQYFL
FKLTNYLFKKLRRKIIWLKQNRLRSITIRDYEFLNTHRQGRVLMFFTNVIRWIVLLIQLTISVPILFAIFPQTEDLALKI
FSYLLEPVKMIFKSVASYIPNLFIILVIYYCIKYIVKGIQYIANEIESENLKISGFYPDWAQPTFNIIRFLLYAFMIAMI
YPYLPGSDSGVFQGISVFVGLIISLGSSTVIGNIIAGLVITYMRPFKLGDRIQLNETTGNVIEKTPFVTRLRTPKNEVVT
IPNSFIMSSHTTNYSVSARQYGLIIHSTVTIGYDVPWRQVHQLLINAARQTTGVLPEPKPFVLETELSDYYPCYQINAYI
KDADKLGDIYSDLHQNIQDVFNEAGVEIMSPHYFAGRDGSASTIPTAPYPDDWVEPSKK

Sequences:

>Translated_619_residues
MKQFLLRLVILAGISFLPTVSNAQLREKAEELLSTTLGNDPEEPVTPTDTLSLDEQHRKDSIKMQELALQLQEMKLNEIL
LKDELESTKNSNATADSLKRSEQRNRIDSLRALTPGVPVVVEGDTLFHLYAKRGGRTPVDRAEDILNIMVKIGTSHSLKK
DSIYIYDSEYVTDIMYGDKVILSITDQDALWQNLSRIALAEQYQPIIQNKIQELREQHSILQIAKRVLLFILVIIIQYFL
FKLTNYLFKKLRRKIIWLKQNRLRSITIRDYEFLNTHRQGRVLMFFTNVIRWIVLLIQLTISVPILFAIFPQTEDLALKI
FSYLLEPVKMIFKSVASYIPNLFIILVIYYCIKYIVKGIQYIANEIESENLKISGFYPDWAQPTFNIIRFLLYAFMIAMI
YPYLPGSDSGVFQGISVFVGLIISLGSSTVIGNIIAGLVITYMRPFKLGDRIQLNETTGNVIEKTPFVTRLRTPKNEVVT
IPNSFIMSSHTTNYSVSARQYGLIIHSTVTIGYDVPWRQVHQLLINAARQTTGVLPEPKPFVLETELSDYYPCYQINAYI
KDADKLGDIYSDLHQNIQDVFNEAGVEIMSPHYFAGRDGSASTIPTAPYPDDWVEPSKK
>Mature_619_residues
MKQFLLRLVILAGISFLPTVSNAQLREKAEELLSTTLGNDPEEPVTPTDTLSLDEQHRKDSIKMQELALQLQEMKLNEIL
LKDELESTKNSNATADSLKRSEQRNRIDSLRALTPGVPVVVEGDTLFHLYAKRGGRTPVDRAEDILNIMVKIGTSHSLKK
DSIYIYDSEYVTDIMYGDKVILSITDQDALWQNLSRIALAEQYQPIIQNKIQELREQHSILQIAKRVLLFILVIIIQYFL
FKLTNYLFKKLRRKIIWLKQNRLRSITIRDYEFLNTHRQGRVLMFFTNVIRWIVLLIQLTISVPILFAIFPQTEDLALKI
FSYLLEPVKMIFKSVASYIPNLFIILVIYYCIKYIVKGIQYIANEIESENLKISGFYPDWAQPTFNIIRFLLYAFMIAMI
YPYLPGSDSGVFQGISVFVGLIISLGSSTVIGNIIAGLVITYMRPFKLGDRIQLNETTGNVIEKTPFVTRLRTPKNEVVT
IPNSFIMSSHTTNYSVSARQYGLIIHSTVTIGYDVPWRQVHQLLINAARQTTGVLPEPKPFVLETELSDYYPCYQINAYI
KDADKLGDIYSDLHQNIQDVFNEAGVEIMSPHYFAGRDGSASTIPTAPYPDDWVEPSKK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=174, Percent_Identity=26.4367816091954, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI2367355, Length=188, Percent_Identity=21.2765957446809, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1786670, Length=202, Percent_Identity=21.7821782178218, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 70876; Mature: 70876

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQFLLRLVILAGISFLPTVSNAQLREKAEELLSTTLGNDPEEPVTPTDTLSLDEQHRKD
CHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
SIKMQELALQLQEMKLNEILLKDELESTKNSNATADSLKRSEQRNRIDSLRALTPGVPVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
VEGDTLFHLYAKRGGRTPVDRAEDILNIMVKIGTSHSLKKDSIYIYDSEYVTDIMYGDKV
ECCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHCCCEE
ILSITDQDALWQNLSRIALAEQYQPIIQNKIQELREQHSILQIAKRVLLFILVIIIQYFL
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKLTNYLFKKLRRKIIWLKQNRLRSITIRDYEFLNTHRQGRVLMFFTNVIRWIVLLIQLT
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHH
ISVPILFAIFPQTEDLALKIFSYLLEPVKMIFKSVASYIPNLFIILVIYYCIKYIVKGIQ
HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIANEIESENLKISGFYPDWAQPTFNIIRFLLYAFMIAMIYPYLPGSDSGVFQGISVFVG
HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LIISLGSSTVIGNIIAGLVITYMRPFKLGDRIQLNETTGNVIEKTPFVTRLRTPKNEVVT
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHCCCCHHHCCCCCCCEEE
IPNSFIMSSHTTNYSVSARQYGLIIHSTVTIGYDVPWRQVHQLLINAARQTTGVLPEPKP
CCCHHHCCCCCCCCEECHHHEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
FVLETELSDYYPCYQINAYIKDADKLGDIYSDLHQNIQDVFNEAGVEIMSPHYFAGRDGS
EEEEECCCCCCCCEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCC
ASTIPTAPYPDDWVEPSKK
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKQFLLRLVILAGISFLPTVSNAQLREKAEELLSTTLGNDPEEPVTPTDTLSLDEQHRKD
CHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
SIKMQELALQLQEMKLNEILLKDELESTKNSNATADSLKRSEQRNRIDSLRALTPGVPVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
VEGDTLFHLYAKRGGRTPVDRAEDILNIMVKIGTSHSLKKDSIYIYDSEYVTDIMYGDKV
ECCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHCCCEE
ILSITDQDALWQNLSRIALAEQYQPIIQNKIQELREQHSILQIAKRVLLFILVIIIQYFL
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKLTNYLFKKLRRKIIWLKQNRLRSITIRDYEFLNTHRQGRVLMFFTNVIRWIVLLIQLT
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHH
ISVPILFAIFPQTEDLALKIFSYLLEPVKMIFKSVASYIPNLFIILVIYYCIKYIVKGIQ
HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIANEIESENLKISGFYPDWAQPTFNIIRFLLYAFMIAMIYPYLPGSDSGVFQGISVFVG
HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LIISLGSSTVIGNIIAGLVITYMRPFKLGDRIQLNETTGNVIEKTPFVTRLRTPKNEVVT
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHCCCCHHHCCCCCCCEEE
IPNSFIMSSHTTNYSVSARQYGLIIHSTVTIGYDVPWRQVHQLLINAARQTTGVLPEPKP
CCCHHHCCCCCCCCEECHHHEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
FVLETELSDYYPCYQINAYIKDADKLGDIYSDLHQNIQDVFNEAGVEIMSPHYFAGRDGS
EEEEECCCCCCCCEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCC
ASTIPTAPYPDDWVEPSKK
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]