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The map label for this gene is xerD [C]

Identifier: 150008853

GI number: 150008853

Start: 2628281

End: 2629528

Strand: Reverse

Name: xerD [C]

Synonym: BDI_2243

Alternate gene names: 150008853

Gene position: 2629528-2628281 (Counterclockwise)

Preceding gene: 150008854

Following gene: 150008851

Centisome position: 54.65

GC content: 55.37

Gene sequence:

>1248_bases
ATGAAAACGAGTATGAGCAGATCGACTTTCAAAATCCTCTTCTACGTGAAGAAGGGCAGCGAGAGAGCCAACGGCTATCT
CCCCCTGATGTGCCGTCTTACGGTGGACGGTGAAATCAAGCAGTTCAGTTGTAAACTGGACGTACCTCCGAAACTTTGGG
ACGTGAAAACGGCACGTGCCACGGGCAAGAGCGCCGAGGCGCAGAAAATCAATGCGGCGGTTGACCGGATACGCGTGGAC
GTGAACCGCCGTTACCAGGAACTGATGCAGTCCGACGGCTATGTCACCGCCGCCAGGCTGAGGGACGCCTGCCTCGGGTT
GGGCGTGAAACGCGAGACGCTGTTGAAACTCTTCGAGCAGCACAACGGGGAGTTCATCAAGAAAGTGGGACACAGCCGCG
TGCAGGGAACATACAACCGCTACCGTACCATATACAGGCACCTTTGCGAGTTCGTCCCGAAAGTATACCGCCGTGACGAC
ATTCCCCTAAAGGAACTCAACCTGACGTTCATCAACAACTTCGAGTATTTCCTGCGTACGGAGAAGAAATGCCGCACCAA
TACCGTATGGGGTTACATGATCGGGCTCAAGCACGTCATCTCCATCGCCCGCAACAGCGGTGCGCTTCCCTTCAACCCCT
TCGCCGGGTACATCAACTCCCCCGAGAGCGTTGACCGGGGCTACCTGACAGAGCGTGAGATACAGACGCTGATGGAGGCC
CCGGTGAAAAGCGGGACCTGCGAACTGGTACGCGACCTCTTCATCTTCTCTGTGTTCACCGGACTGGCATACGCGGACGT
GAAGGCGCTGACGACCGACCGGCTCCAGACCTTCTTCGACGGCAACCTCTGGATCATCACCCGCCGGCGCAAGACAAACA
CCGAGTCCAACATCCGCCTGCTGGACGTTCCCAAGCGCATCATAGAGAAGTACAAGGGGCTGTCCAAGGACGATCATGTA
TTTCCGGTACCGAGCAACGGCAGATGCAACACCATATTGAAGGAACTTGGCAGGCAGTGCGGTTTCAAGATAAGGTTGAC
CTATCATGTTGCCCGACATACGAACGCCACCACCGTGCTGCTCTCGCACGGTGTGCCCATCGAGACCGTAAGCCGTCTTT
TGGGGCATACGGATTTGAAAACCACCCAGATATATGCCCGGATAACCAACCAGAAGATCAGCAGCGACATGGAAATCCTG
TCCCATAAGCTGGAAAAGATGGAGAAGGAAATATGCGATGCCATATGA

Upstream 100 bases:

>100_bases
AATAAGAAACGGCACAACGGGTTCTATTTCAGCAATTTGCACAGTTTTTCATACCTGAGGACAACTCGCTTGATATTAAC
TTTGTAACGATCAAAAAAGT

Downstream 100 bases:

>100_bases
GGAAATGGTATTTATGAAACGGACGATTTTCCCCTTCCTCATCAAAGTTCGTCCGTCCCTGCGGAACTCCGCGTTTTCCC
TTCGGTTTCCGGCAGAAAAT

Product: transposase

Products: NA

Alternate protein names: Tyrosine Type Site-Specific Recombinase; Transposase; Integrase Family Protein; Site-Specific Recombinase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Bacteriophage Integrase; Phage Integrase; Integrase/Transposase; Integrase Protein; Prophage; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MKTSMSRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARATGKSAEAQKINAAVDRIRVD
VNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNGEFIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDD
IPLKELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMEA
PVKSGTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKGLSKDDHV
FPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEIL
SHKLEKMEKEICDAI

Sequences:

>Translated_415_residues
MKTSMSRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARATGKSAEAQKINAAVDRIRVD
VNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNGEFIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDD
IPLKELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMEA
PVKSGTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKGLSKDDHV
FPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEIL
SHKLEKMEKEICDAI
>Mature_415_residues
MKTSMSRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARATGKSAEAQKINAAVDRIRVD
VNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNGEFIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDD
IPLKELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMEA
PVKSGTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKGLSKDDHV
FPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEIL
SHKLEKMEKEICDAI

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47722; Mature: 47722

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSMSRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARA
CCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCHHCCCHHHC
TGKSAEAQKINAAVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCHHHHHHHHHH
HNGEFIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRT
HCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCCHHHHHC
EKKCRTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMEA
CHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHC
PVKSGTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEE
LDVPKRIIEKYKGLSKDDHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTNATTVL
EHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEE
LSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHKLEKMEKEICDAI
EECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTSMSRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARA
CCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCHHCCCHHHC
TGKSAEAQKINAAVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCHHHHHHHHHH
HNGEFIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRT
HCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCCHHHHHC
EKKCRTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMEA
CHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHC
PVKSGTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEE
LDVPKRIIEKYKGLSKDDHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTNATTVL
EHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEE
LSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHKLEKMEKEICDAI
EECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA