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The map label for this gene is araC [H]

Identifier: 150008622

GI number: 150008622

Start: 2377577

End: 2378455

Strand: Direct

Name: araC [H]

Synonym: BDI_2008

Alternate gene names: 150008622

Gene position: 2377577-2378455 (Clockwise)

Preceding gene: 150008621

Following gene: 150008623

Centisome position: 49.42

GC content: 43.34

Gene sequence:

>879_bases
ATGAATCATAATATACCGCAATACGACTTCTATAAACACAAATACGGCGATGAGCTACTTATCGACGTCGTTCCCTTGAA
CACGATCAAGAAGTATCTCAAGGAACAACCCGTACATATATTGACGTATTACGATATAACATTGATCACTAGCGGGGAGG
GAGAATTCCTTATCGATCATCAAGCGAACCGGGTAAAGCCTCAAGATATCATCTTTACCCGGCCCGGCGAAATACGCAAA
TGGGACGATAAAACGATACAAGACGGATTCGCTCTTATCTTTGAGGAAGAGTTCCTGCTCTCTTTTTTCAATGATCCGGC
ATTTCTCCGGAACCTCTCTTATTTCCATACGGAAAGACGGTCTTCCAAGCTCAGTCTCGACAAGAAAGCCTATGCCCGCA
TCTCCGAGTTGATCTCGGAGATCGATAAAGAGATCAAGAACTATCAGTCGAAAGACAAACACTTACTCCGGGCCTTGTTG
TACGAGACATTAATGTTGCTCAACAGGTTATATTCTAACTCGAACGCTTTACCACCAGACACAAACACCCGATCTAAAAG
CATCTATGTAGACCGATTTATCGAGTTAGTAAACCATTCCTTCAAGCAAGATCATTCCATCCGGAGCTATGCCGATCAGC
TTTGCATCACCCCGAACTACCTGAATGAGATCGTGAAAAACGCTACGGGCATCAACGCTAAACAATACATCCTAAACAAA
ATACTAATCGAGAGCAAACGGCTATTGACTTATACAGACTTGCCTATATCCGCCATAACGGAAGCTCTAGGTTACGAGGA
TCCATCCTATTTCATCCGTCTATTTCGTTCCCAAACAAACATGACCCCGCTAAACTATCGCAGGAATACAAAACCGTAA

Upstream 100 bases:

>100_bases
TACCAGTACGTAGAATCCACCCGAGGGCATATCTGGGCCAATTGGCGGGCTTATCTCCTCCAATTCGCTCCTATGCTTTT
CAAATAAAAGACATGAGCAG

Downstream 100 bases:

>100_bases
AAAGTACTATTTCCTCCTTTATACGTATTATACGAACTCCATTCGGTATGTCTAATTTTGCCTCTATCAATAAATAAAGC
ATCATGAGACAATACAAATC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNHNIPQYDFYKHKYGDELLIDVVPLNTIKKYLKEQPVHILTYYDITLITSGEGEFLIDHQANRVKPQDIIFTRPGEIRK
WDDKTIQDGFALIFEEEFLLSFFNDPAFLRNLSYFHTERRSSKLSLDKKAYARISELISEIDKEIKNYQSKDKHLLRALL
YETLMLLNRLYSNSNALPPDTNTRSKSIYVDRFIELVNHSFKQDHSIRSYADQLCITPNYLNEIVKNATGINAKQYILNK
ILIESKRLLTYTDLPISAITEALGYEDPSYFIRLFRSQTNMTPLNYRRNTKP

Sequences:

>Translated_292_residues
MNHNIPQYDFYKHKYGDELLIDVVPLNTIKKYLKEQPVHILTYYDITLITSGEGEFLIDHQANRVKPQDIIFTRPGEIRK
WDDKTIQDGFALIFEEEFLLSFFNDPAFLRNLSYFHTERRSSKLSLDKKAYARISELISEIDKEIKNYQSKDKHLLRALL
YETLMLLNRLYSNSNALPPDTNTRSKSIYVDRFIELVNHSFKQDHSIRSYADQLCITPNYLNEIVKNATGINAKQYILNK
ILIESKRLLTYTDLPISAITEALGYEDPSYFIRLFRSQTNMTPLNYRRNTKP
>Mature_292_residues
MNHNIPQYDFYKHKYGDELLIDVVPLNTIKKYLKEQPVHILTYYDITLITSGEGEFLIDHQANRVKPQDIIFTRPGEIRK
WDDKTIQDGFALIFEEEFLLSFFNDPAFLRNLSYFHTERRSSKLSLDKKAYARISELISEIDKEIKNYQSKDKHLLRALL
YETLMLLNRLYSNSNALPPDTNTRSKSIYVDRFIELVNHSFKQDHSIRSYADQLCITPNYLNEIVKNATGINAKQYILNK
ILIESKRLLTYTDLPISAITEALGYEDPSYFIRLFRSQTNMTPLNYRRNTKP

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=298, Percent_Identity=22.4832214765101, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI171474011, Length=162, Percent_Identity=26.5432098765432, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34408; Mature: 34408

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHNIPQYDFYKHKYGDELLIDVVPLNTIKKYLKEQPVHILTYYDITLITSGEGEFLIDH
CCCCCCCCCCHHHHCCCEEEEEEECHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEC
QANRVKPQDIIFTRPGEIRKWDDKTIQDGFALIFEEEFLLSFFNDPAFLRNLSYFHTERR
CCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SSKLSLDKKAYARISELISEIDKEIKNYQSKDKHLLRALLYETLMLLNRLYSNSNALPPD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TNTRSKSIYVDRFIELVNHSFKQDHSIRSYADQLCITPNYLNEIVKNATGINAKQYILNK
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH
ILIESKRLLTYTDLPISAITEALGYEDPSYFIRLFRSQTNMTPLNYRRNTKP
HHHHCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNHNIPQYDFYKHKYGDELLIDVVPLNTIKKYLKEQPVHILTYYDITLITSGEGEFLIDH
CCCCCCCCCCHHHHCCCEEEEEEECHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEC
QANRVKPQDIIFTRPGEIRKWDDKTIQDGFALIFEEEFLLSFFNDPAFLRNLSYFHTERR
CCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SSKLSLDKKAYARISELISEIDKEIKNYQSKDKHLLRALLYETLMLLNRLYSNSNALPPD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TNTRSKSIYVDRFIELVNHSFKQDHSIRSYADQLCITPNYLNEIVKNATGINAKQYILNK
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH
ILIESKRLLTYTDLPISAITEALGYEDPSYFIRLFRSQTNMTPLNYRRNTKP
HHHHCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]