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The map label for this gene is sigW [H]

Identifier: 150008327

GI number: 150008327

Start: 2012591

End: 2013184

Strand: Reverse

Name: sigW [H]

Synonym: BDI_1696

Alternate gene names: 150008327

Gene position: 2013184-2012591 (Counterclockwise)

Preceding gene: 150008328

Following gene: 150008326

Centisome position: 41.84

GC content: 39.56

Gene sequence:

>594_bases
ATGAAGACTTTAAAAATGATGACCGACGAGGAATTGGTTGTCCTTTATGCAGAAGGTAATAATGCCGCTTTCGATATTTT
ATTAAATCGATACAAAAGTAGCATTCATTCTTACATTTATTTCATAGTACGTAACAAAGAGCTTACGGAGGATATCTTTC
AAGAGACCTTCGTGAAGGTTATCATGACTATAAAACAAGGTCGCTATACTGAGAACGGCAAGTTTAAGGCATGGATTACT
CGTATTGCCCATAACTTGATTATCGATAATTTCCGTCAAGAACGTTGCGAAAACACGATCTCGAATGATGAGGTAGAAAT
CGACTTATTTAATAATATCAAGCTTTGCGATGGTACGATAGAGGATAATATCGTGCGCCATCAAGTATTGTCTGACGTGA
AGAAATTGGTAAAGCATTTGCCGGATAACCAGCGTGAAGTGTTGGAGATGCGTTACTATCAAGACCTTAGTTTTAAGGAA
ATCGCCGATATCACGGGGGTTAGCATCAATACGGCCTTAGGGCGTATGCGTTACGCTATCTTGAATATGCGTCGTATGGC
CGATGAGAACCGTATCGAGCTATCTATGGTGTAA

Upstream 100 bases:

>100_bases
TTTTTCGTTCTTTTGCTTCCATAAATAACATTGTATAACAGTTAAACCCCCATCGCCTATAGCATAAACATTACTCGAAT
AAACTAAAAATGTGAAAGTA

Downstream 100 bases:

>100_bases
AATAATTTTCTTTCCATGCAATAAGTCTTAGGTCCCTACGTTTTATTAGCAAACAAGATAAAAATAGAGGTGCCTATGAG
GAAGCTTTCTACGCAATGCA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MKTLKMMTDEELVVLYAEGNNAAFDILLNRYKSSIHSYIYFIVRNKELTEDIFQETFVKVIMTIKQGRYTENGKFKAWIT
RIAHNLIIDNFRQERCENTISNDEVEIDLFNNIKLCDGTIEDNIVRHQVLSDVKKLVKHLPDNQREVLEMRYYQDLSFKE
IADITGVSINTALGRMRYAILNMRRMADENRIELSMV

Sequences:

>Translated_197_residues
MKTLKMMTDEELVVLYAEGNNAAFDILLNRYKSSIHSYIYFIVRNKELTEDIFQETFVKVIMTIKQGRYTENGKFKAWIT
RIAHNLIIDNFRQERCENTISNDEVEIDLFNNIKLCDGTIEDNIVRHQVLSDVKKLVKHLPDNQREVLEMRYYQDLSFKE
IADITGVSINTALGRMRYAILNMRRMADENRIELSMV
>Mature_197_residues
MKTLKMMTDEELVVLYAEGNNAAFDILLNRYKSSIHSYIYFIVRNKELTEDIFQETFVKVIMTIKQGRYTENGKFKAWIT
RIAHNLIIDNFRQERCENTISNDEVEIDLFNNIKLCDGTIEDNIVRHQVLSDVKKLVKHLPDNQREVLEMRYYQDLSFKE
IADITGVSINTALGRMRYAILNMRRMADENRIELSMV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23238; Mature: 23238

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLKMMTDEELVVLYAEGNNAAFDILLNRYKSSIHSYIYFIVRNKELTEDIFQETFVKV
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHH
IMTIKQGRYTENGKFKAWITRIAHNLIIDNFRQERCENTISNDEVEIDLFNNIKLCDGTI
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEECCCH
EDNIVRHQVLSDVKKLVKHLPDNQREVLEMRYYQDLSFKEIADITGVSINTALGRMRYAI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
LNMRRMADENRIELSMV
HHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MKTLKMMTDEELVVLYAEGNNAAFDILLNRYKSSIHSYIYFIVRNKELTEDIFQETFVKV
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHH
IMTIKQGRYTENGKFKAWITRIAHNLIIDNFRQERCENTISNDEVEIDLFNNIKLCDGTI
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEECCCH
EDNIVRHQVLSDVKKLVKHLPDNQREVLEMRYYQDLSFKEIADITGVSINTALGRMRYAI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
LNMRRMADENRIELSMV
HHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]