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The map label for this gene is ppiB [C]

Identifier: 150008204

GI number: 150008204

Start: 1837607

End: 1838371

Strand: Direct

Name: ppiB [C]

Synonym: BDI_1570

Alternate gene names: 150008204

Gene position: 1837607-1838371 (Clockwise)

Preceding gene: 150008203

Following gene: 150008205

Centisome position: 38.19

GC content: 47.06

Gene sequence:

>765_bases
ATGGAAAATCAAGCAACTGAGACAAAGGTGCTTATGCACACCAACAAAGGAGATATAAAGTTGAAATTATATAACGACAC
GCCATTACATCGTGATAACTTTATCAAGTTGGTAAAAGAAGGGCAATATAACGGCTTGCTGTTCCACCGTGTGATCAAGG
ATTTCATGATACAAGGAGGTGACGTAACTTCCAAGGATGCCCCAATGAACAAGCAACTGGGAGCGGGCGATCTGGGCTAT
ACCGTTCCCGCCGAATTCCGTTACCCGAAATATTTCCATAAGAAAGGAACCCTTTGCGCCGCACGTACCGGAGACGAAGT
GAACCCGGAAAAGGCCTCTTCCGCCTCCCAATTCTATATCGTAACGGGGAAAAAGTATTCGGAACAAGAGTTGAACCAGA
TGGAAAAGCAACTGGAAGGCCGTCTGAAACAAGAGATATTCGCCCGCCTGCAAAACGAGAACAAGTCTAAGATCATGGAA
TTCTATCGCAGTGGTAACAAGGAAGAACTGGCGATCCTTCGTGATACCTTGATCGGCAAGACCGAGCTGGAGGCCGAGAA
GCGGAAAGACGAGGTAAAGTTAAACCCGGAACTCCGTGAGGCTTACAAGAATGTAGGTGGCGTACCGTTCCTCGACAATC
AATACACGGTTTACGGAGAAGTGGTGGAAGGCATGGATGTCGTAGACGCCATACAGTCCTCCAAGACCAACAAGCAAGAT
CGTCCGACCGAGAATATCGTCATTAACTCCGTAGAGATCTTATAA

Upstream 100 bases:

>100_bases
AAGTCGTGGATAAGATACAGTTCGTCGAGACGAACGCCGAAGACAGGCCCACGAAGAACATAAAGATCAAGTCAATGAAA
CTCATAGAAAAATAAGTAAA

Downstream 100 bases:

>100_bases
TGCGGTTATCGGCTTCATAAACCGACGAAGGGGCTTATCGCGAATATCAGTAATAAAAGAGCTATCTTGAGAAAGATCAT
ACATATCGATATGGATGCCT

Product: cyclophilin-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: PPIase; Rotamase [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MENQATETKVLMHTNKGDIKLKLYNDTPLHRDNFIKLVKEGQYNGLLFHRVIKDFMIQGGDVTSKDAPMNKQLGAGDLGY
TVPAEFRYPKYFHKKGTLCAARTGDEVNPEKASSASQFYIVTGKKYSEQELNQMEKQLEGRLKQEIFARLQNENKSKIME
FYRSGNKEELAILRDTLIGKTELEAEKRKDEVKLNPELREAYKNVGGVPFLDNQYTVYGEVVEGMDVVDAIQSSKTNKQD
RPTENIVINSVEIL

Sequences:

>Translated_254_residues
MENQATETKVLMHTNKGDIKLKLYNDTPLHRDNFIKLVKEGQYNGLLFHRVIKDFMIQGGDVTSKDAPMNKQLGAGDLGY
TVPAEFRYPKYFHKKGTLCAARTGDEVNPEKASSASQFYIVTGKKYSEQELNQMEKQLEGRLKQEIFARLQNENKSKIME
FYRSGNKEELAILRDTLIGKTELEAEKRKDEVKLNPELREAYKNVGGVPFLDNQYTVYGEVVEGMDVVDAIQSSKTNKQD
RPTENIVINSVEIL
>Mature_254_residues
MENQATETKVLMHTNKGDIKLKLYNDTPLHRDNFIKLVKEGQYNGLLFHRVIKDFMIQGGDVTSKDAPMNKQLGAGDLGY
TVPAEFRYPKYFHKKGTLCAARTGDEVNPEKASSASQFYIVTGKKYSEQELNQMEKQLEGRLKQEIFARLQNENKSKIME
FYRSGNKEELAILRDTLIGKTELEAEKRKDEVKLNPELREAYKNVGGVPFLDNQYTVYGEVVEGMDVVDAIQSSKTNKQD
RPTENIVINSVEIL

Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides [H]

COG id: COG0652

COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase cyclophilin-type domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71980594, Length=135, Percent_Identity=34.0740740740741, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71980590, Length=134, Percent_Identity=34.3283582089552, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: 780 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015891
- InterPro:   IPR002130 [H]

Pfam domain/function: PF00160 Pro_isomerase [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 28991; Mature: 28991

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00170 CSA_PPIASE_1 ; PS50072 CSA_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENQATETKVLMHTNKGDIKLKLYNDTPLHRDNFIKLVKEGQYNGLLFHRVIKDFMIQGG
CCCCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
DVTSKDAPMNKQLGAGDLGYTVPAEFRYPKYFHKKGTLCAARTGDEVNPEKASSASQFYI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCHHCCCCCEEEE
VTGKKYSEQELNQMEKQLEGRLKQEIFARLQNENKSKIMEFYRSGNKEELAILRDTLIGK
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
TELEAEKRKDEVKLNPELREAYKNVGGVPFLDNQYTVYGEVVEGMDVVDAIQSSKTNKQD
HHHHHHHHHCCEEECHHHHHHHHHCCCCCEECCCEEEHHHHHCCHHHHHHHHHCCCCCCC
RPTENIVINSVEIL
CCCCCEEEEEEEEC
>Mature Secondary Structure
MENQATETKVLMHTNKGDIKLKLYNDTPLHRDNFIKLVKEGQYNGLLFHRVIKDFMIQGG
CCCCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
DVTSKDAPMNKQLGAGDLGYTVPAEFRYPKYFHKKGTLCAARTGDEVNPEKASSASQFYI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCHHCCCCCEEEE
VTGKKYSEQELNQMEKQLEGRLKQEIFARLQNENKSKIMEFYRSGNKEELAILRDTLIGK
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
TELEAEKRKDEVKLNPELREAYKNVGGVPFLDNQYTVYGEVVEGMDVVDAIQSSKTNKQD
HHHHHHHHHCCEEECHHHHHHHHHCCCCCEECCCEEEHHHHHCCHHHHHHHHHCCCCCCC
RPTENIVINSVEIL
CCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA