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The map label for this gene is ycdX [C]

Identifier: 150008163

GI number: 150008163

Start: 1792243

End: 1792953

Strand: Direct

Name: ycdX [C]

Synonym: BDI_1529

Alternate gene names: 150008163

Gene position: 1792243-1792953 (Clockwise)

Preceding gene: 150008162

Following gene: 150008165

Centisome position: 37.25

GC content: 52.6

Gene sequence:

>711_bases
ATGAAGACGTTACTTGACGTGCATACCCATACGGTAGCCAGTGGGCATGCCTTTAGCACCCTGCAAGAAATGGCAGTGGC
CGCCTCCGAGAAAGGATTGAAGTTACTAGGTATAACAGAGCATGCCCCCGGCATACCGGGGGCATGCTCCCCGATTTACT
TCCGCAACCTACATGTGGTTCCCCGCCGGATATACGGTGTCGAGTTATTGCTCGGAGCGGAATTGAACATCATCGACTAT
AAGGGTACGATCGATATGGGCGAGGAGTACTTCCCGATGCTGGATATCCGGATAGCGGGCATCCACTCGCTTTGCTACAA
ACCGGGAACGGTCGAGCAGAACACGGAGGCGATGATCGGGGCGATCCGCAACCCGCATGTCCACATCATCAGCCACCCGG
GAGACGGCACGGCCGAGGTGGATTTCGAGCCTATCGTATTAGCGTCCAAAGAGCATCACACGTTGCTGGAGATCAACAAC
AGCTCTCTCAACCCGGTCCGCAAGAAACTCACCGCCCGGGATAATAACCTCACGATCTTGCGCCTATGCAAGAAATACGA
GGTTCCTGTGATTTTAGGGAGCGACGCGCATATCTCTTTCGATATAGCCCGGTACGATCATATCTACGAGTTATTGCAAG
AGACACGATTTCCGGAGGAATTGATATTGAACGACAAGGTAGAGGCGTTCAAGAAGTTCATAGGGAGATAA

Upstream 100 bases:

>100_bases
GGGGCACGATCTTGCTGATCTCGCACGACGCTTATTTTATCCGGGAATTGGGTATCCACCAAATAATAACTACCTTCGCG
GGTAGGTTAAAGACGAATTT

Downstream 100 bases:

>100_bases
GCGGTGCCTTACATCCGGGCAGATACATTCCTGCAACCGCGCAGATACGTATCTGCAGCGGGGTAGATACGGACGTGCAT
CCGTGCAGATACGTACCTGC

Product: putative hydrolase

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKTLLDVHTHTVASGHAFSTLQEMAVAASEKGLKLLGITEHAPGIPGACSPIYFRNLHVVPRRIYGVELLLGAELNIIDY
KGTIDMGEEYFPMLDIRIAGIHSLCYKPGTVEQNTEAMIGAIRNPHVHIISHPGDGTAEVDFEPIVLASKEHHTLLEINN
SSLNPVRKKLTARDNNLTILRLCKKYEVPVILGSDAHISFDIARYDHIYELLQETRFPEELILNDKVEAFKKFIGR

Sequences:

>Translated_236_residues
MKTLLDVHTHTVASGHAFSTLQEMAVAASEKGLKLLGITEHAPGIPGACSPIYFRNLHVVPRRIYGVELLLGAELNIIDY
KGTIDMGEEYFPMLDIRIAGIHSLCYKPGTVEQNTEAMIGAIRNPHVHIISHPGDGTAEVDFEPIVLASKEHHTLLEINN
SSLNPVRKKLTARDNNLTILRLCKKYEVPVILGSDAHISFDIARYDHIYELLQETRFPEELILNDKVEAFKKFIGR
>Mature_236_residues
MKTLLDVHTHTVASGHAFSTLQEMAVAASEKGLKLLGITEHAPGIPGACSPIYFRNLHVVPRRIYGVELLLGAELNIIDY
KGTIDMGEEYFPMLDIRIAGIHSLCYKPGTVEQNTEAMIGAIRNPHVHIISHPGDGTAEVDFEPIVLASKEHHTLLEINN
SSLNPVRKKLTARDNNLTILRLCKKYEVPVILGSDAHISFDIARYDHIYELLQETRFPEELILNDKVEAFKKFIGR

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=220, Percent_Identity=39.5454545454545, Blast_Score=151, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 26370; Mature: 26370

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLLDVHTHTVASGHAFSTLQEMAVAASEKGLKLLGITEHAPGIPGACSPIYFRNLHVV
CCCEEEEHHHEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECEEEE
PRRIYGVELLLGAELNIIDYKGTIDMGEEYFPMLDIRIAGIHSLCYKPGTVEQNTEAMIG
CHHHEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEECHHHHHCCCCCCCCCCHHHHH
AIRNPHVHIISHPGDGTAEVDFEPIVLASKEHHTLLEINNSSLNPVRKKLTARDNNLTIL
HCCCCEEEEEECCCCCCEEECCCEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCEEEE
RLCKKYEVPVILGSDAHISFDIARYDHIYELLQETRFPEELILNDKVEAFKKFIGR
EEHHHCCCCEEECCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MKTLLDVHTHTVASGHAFSTLQEMAVAASEKGLKLLGITEHAPGIPGACSPIYFRNLHVV
CCCEEEEHHHEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECEEEE
PRRIYGVELLLGAELNIIDYKGTIDMGEEYFPMLDIRIAGIHSLCYKPGTVEQNTEAMIG
CHHHEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEECHHHHHCCCCCCCCCCHHHHH
AIRNPHVHIISHPGDGTAEVDFEPIVLASKEHHTLLEINNSSLNPVRKKLTARDNNLTIL
HCCCCEEEEEECCCCCCEEECCCEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCEEEE
RLCKKYEVPVILGSDAHISFDIARYDHIYELLQETRFPEELILNDKVEAFKKFIGR
EEHHHCCCCEEECCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA