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The map label for this gene is ydgJ [C]

Identifier: 150007797

GI number: 150007797

Start: 1337990

End: 1339390

Strand: Reverse

Name: ydgJ [C]

Synonym: BDI_1155

Alternate gene names: 150007797

Gene position: 1339390-1337990 (Counterclockwise)

Preceding gene: 150007798

Following gene: 150007796

Centisome position: 27.84

GC content: 46.75

Gene sequence:

>1401_bases
ATGGAAAACACTCGTCGTTCATTCCTTAAGAAAGTATCTGCCGCTGGTATTGGTGCCGCAGGCTTGGCAATGGCTGGAAA
CGCCGGAGCTACAACAACTGCCGCTGAACCCCAAAAGAAAAAAACAGCCGGTAAAGATGATGGTAAATTACGTTTCGGTT
TCATCGGAACGGGTTCTAGATGCCATGAGCATATTAATAATGTATTGGCGATCCCCGGTAATAAGATCGTAGCGATTTGC
GATATCCAACAGGGCCCGATCGATAGTACCTTGAAACATATCGCTAAATTTAATGTCCCTGCTCCGAAAGTTTACAAAGG
GGGTGAACGTGAATTTGAGAATATGTTGAACAACGAGGAGTTTGATTGCGTGATCATCGCAAGTCCTTGGGAATGGCACG
TACCGATGTCTGTCGCCGCTATGAAGGCTGGTGTTCCTTATGTAGGCGTGGAGGTTTCTGCGGCTAACACGTTAGAGGAG
TGCTGGGATTTGGTAAATGTTTCGGAAGCAACCGGAAGCCATTTGAATATCATGGAGAACGTATGTTATCGTCGTGACTG
TATGGCTGCGTTGAATATGGTCCGCCAAGGTTTGTTCGGCGAGATCTTGCATGGTGGTTGTGGTTATGAGCATGACTTGC
GTGAGGTGAAATTCAACGATGGAACTCATTACAACTATGTACCGGGTAGTGGTGATCTTCGTATGGGTCCGACGGCTTTC
GCCGAGGCTCAATGGCGTACGAACCATTCCGTACATCGTAATGGCGATATCTATCCGACTCACGGTATCGGACCGATAGC
TCATTGTATGGATATCAATCGTGGTAACCGTTTCCTTTCTTTATCCGCTATGGCTACTCAATCTCGTGGATTGCATAAGT
TTATCGTGGATAATGGGGGTGAGAATCATCCGTTGGCGAAGGTCAACTTCAATTTGGGAGATATCGTGACTTCTATGATT
AAGTGTTCTAATGGACAAACGATTATCGTAACCCATGATACCAATTCTCCTCGCCCTTATTCATTAGGTTTCCGTGTTCA
GGGAACTGAGGGTTTATGGATGAATGATGGCGATCATGTATATGTACAAGGAAAGTCTAAGCCTCATCGTTGGGATGATT
CCGATGAATGGTTCAAGAAATATGATCATAAATTGTGGGCTTCCTTAGAGTCTCAAGCTGCTGAGGCCGGACACGGTGGT
ATGGACTATATCATGATGTACGACTTGATCGACGCTATCCGTAATAAGAAACCGGCTCCAATGGACTGCTATGACGCTGC
CGCTTGGAGCGCTATCTCCGGCTTGTCGGAGATGTCAATCGCTCGTGGCGGTGCTTTGGTAGACTTCCCGGATTTCACCC
GTGGGCAATGGATTCACCGTCAACCGCAATTCGCTTTGTAA

Upstream 100 bases:

>100_bases
TCTTGGACTCTTTATTTTTCAAAATACTCAATAACGTTTTGATTGAAAAAATATTTTTTTAATTTTGTATCCTCAAAACA
CAAACTAATTTATAAAATAT

Downstream 100 bases:

>100_bases
TAGATTTTCATAAAATACTAGGGAAGGATGTCTTTGTTAAAGGCATCCTTTTCTTTTTTATATACATTTTTCTTGTCTCT
TCGAGTATTATGATTATTTT

Product: Gfo/Idh/MocA family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MENTRRSFLKKVSAAGIGAAGLAMAGNAGATTTAAEPQKKKTAGKDDGKLRFGFIGTGSRCHEHINNVLAIPGNKIVAIC
DIQQGPIDSTLKHIAKFNVPAPKVYKGGEREFENMLNNEEFDCVIIASPWEWHVPMSVAAMKAGVPYVGVEVSAANTLEE
CWDLVNVSEATGSHLNIMENVCYRRDCMAALNMVRQGLFGEILHGGCGYEHDLREVKFNDGTHYNYVPGSGDLRMGPTAF
AEAQWRTNHSVHRNGDIYPTHGIGPIAHCMDINRGNRFLSLSAMATQSRGLHKFIVDNGGENHPLAKVNFNLGDIVTSMI
KCSNGQTIIVTHDTNSPRPYSLGFRVQGTEGLWMNDGDHVYVQGKSKPHRWDDSDEWFKKYDHKLWASLESQAAEAGHGG
MDYIMMYDLIDAIRNKKPAPMDCYDAAAWSAISGLSEMSIARGGALVDFPDFTRGQWIHRQPQFAL

Sequences:

>Translated_466_residues
MENTRRSFLKKVSAAGIGAAGLAMAGNAGATTTAAEPQKKKTAGKDDGKLRFGFIGTGSRCHEHINNVLAIPGNKIVAIC
DIQQGPIDSTLKHIAKFNVPAPKVYKGGEREFENMLNNEEFDCVIIASPWEWHVPMSVAAMKAGVPYVGVEVSAANTLEE
CWDLVNVSEATGSHLNIMENVCYRRDCMAALNMVRQGLFGEILHGGCGYEHDLREVKFNDGTHYNYVPGSGDLRMGPTAF
AEAQWRTNHSVHRNGDIYPTHGIGPIAHCMDINRGNRFLSLSAMATQSRGLHKFIVDNGGENHPLAKVNFNLGDIVTSMI
KCSNGQTIIVTHDTNSPRPYSLGFRVQGTEGLWMNDGDHVYVQGKSKPHRWDDSDEWFKKYDHKLWASLESQAAEAGHGG
MDYIMMYDLIDAIRNKKPAPMDCYDAAAWSAISGLSEMSIARGGALVDFPDFTRGQWIHRQPQFAL
>Mature_466_residues
MENTRRSFLKKVSAAGIGAAGLAMAGNAGATTTAAEPQKKKTAGKDDGKLRFGFIGTGSRCHEHINNVLAIPGNKIVAIC
DIQQGPIDSTLKHIAKFNVPAPKVYKGGEREFENMLNNEEFDCVIIASPWEWHVPMSVAAMKAGVPYVGVEVSAANTLEE
CWDLVNVSEATGSHLNIMENVCYRRDCMAALNMVRQGLFGEILHGGCGYEHDLREVKFNDGTHYNYVPGSGDLRMGPTAF
AEAQWRTNHSVHRNGDIYPTHGIGPIAHCMDINRGNRFLSLSAMATQSRGLHKFIVDNGGENHPLAKVNFNLGDIVTSMI
KCSNGQTIIVTHDTNSPRPYSLGFRVQGTEGLWMNDGDHVYVQGKSKPHRWDDSDEWFKKYDHKLWASLESQAAEAGHGG
MDYIMMYDLIDAIRNKKPAPMDCYDAAAWSAISGLSEMSIARGGALVDFPDFTRGQWIHRQPQFAL

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GH109_PARD8 (A6LB54)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001302540.1
- ProteinModelPortal:   A6LB54
- SMR:   A6LB54
- STRING:   A6LB54
- GeneID:   5306308
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_1155
- eggNOG:   COG0673
- HOGENOM:   HBG611861
- OMA:   ENVCYRR
- ProtClustDB:   CLSK2538766
- BioCyc:   PDIS435591:BDI_1155-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- Gene3D:   G3DSA:3.40.50.720
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF01408 GFO_IDH_MocA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 51272; Mature: 51272

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS51318 TAT

Important sites: BINDING 81-81 BINDING 180-180 BINDING 209-209 BINDING 246-246 BINDING 258-258 BINDING 340-340

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENTRRSFLKKVSAAGIGAAGLAMAGNAGATTTAAEPQKKKTAGKDDGKLRFGFIGTGSR
CCCHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCCCCHHHHCCCCCCCEEEEEEECCCHH
CHEHINNVLAIPGNKIVAICDIQQGPIDSTLKHIAKFNVPAPKVYKGGEREFENMLNNEE
HHHHHCCEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHCCCC
FDCVIIASPWEWHVPMSVAAMKAGVPYVGVEVSAANTLEECWDLVNVSEATGSHLNIMEN
CCEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCHHHCCCHHHHHHH
VCYRRDCMAALNMVRQGLFGEILHGGCGYEHDLREVKFNDGTHYNYVPGSGDLRMGPTAF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCHHH
AEAQWRTNHSVHRNGDIYPTHGIGPIAHCMDINRGNRFLSLSAMATQSRGLHKFIVDNGG
HCCHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEHHHHCCCCEEEEECCCC
ENHPLAKVNFNLGDIVTSMIKCSNGQTIIVTHDTNSPRPYSLGFRVQGTEGLWMNDGDHV
CCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEECCCCEE
YVQGKSKPHRWDDSDEWFKKYDHKLWASLESQAAEAGHGGMDYIMMYDLIDAIRNKKPAP
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
MDCYDAAAWSAISGLSEMSIARGGALVDFPDFTRGQWIHRQPQFAL
CCHHHHHHHHHHHCHHHHHHHCCCCEEECCCCCCCCEECCCCCCCC
>Mature Secondary Structure
MENTRRSFLKKVSAAGIGAAGLAMAGNAGATTTAAEPQKKKTAGKDDGKLRFGFIGTGSR
CCCHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCCCCHHHHCCCCCCCEEEEEEECCCHH
CHEHINNVLAIPGNKIVAICDIQQGPIDSTLKHIAKFNVPAPKVYKGGEREFENMLNNEE
HHHHHCCEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHCCCC
FDCVIIASPWEWHVPMSVAAMKAGVPYVGVEVSAANTLEECWDLVNVSEATGSHLNIMEN
CCEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCHHHCCCHHHHHHH
VCYRRDCMAALNMVRQGLFGEILHGGCGYEHDLREVKFNDGTHYNYVPGSGDLRMGPTAF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCHHH
AEAQWRTNHSVHRNGDIYPTHGIGPIAHCMDINRGNRFLSLSAMATQSRGLHKFIVDNGG
HCCHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEHHHHCCCCEEEEECCCC
ENHPLAKVNFNLGDIVTSMIKCSNGQTIIVTHDTNSPRPYSLGFRVQGTEGLWMNDGDHV
CCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEECCCCEE
YVQGKSKPHRWDDSDEWFKKYDHKLWASLESQAAEAGHGGMDYIMMYDLIDAIRNKKPAP
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
MDCYDAAAWSAISGLSEMSIARGGALVDFPDFTRGQWIHRQPQFAL
CCHHHHHHHHHHHCHHHHHHHCCCCEEECCCCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA