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The map label for this gene is ykfC [C]

Identifier: 150007547

GI number: 150007547

Start: 1032388

End: 1033902

Strand: Direct

Name: ykfC [C]

Synonym: BDI_0900

Alternate gene names: 150007547

Gene position: 1032388-1033902 (Clockwise)

Preceding gene: 150007545

Following gene: 150007548

Centisome position: 21.46

GC content: 48.91

Gene sequence:

>1515_bases
ATGAGGAGAAAAGGTGACTTTTCCGGGGATATAGCCCGGAAAGAAAACTATTACAAGGCTTTTGATCATGCCAGCAAGAA
CAAGCATGGCAAAAAGGCCATAATAAAGTTCGAGGCGGACTTGGAAAAGAACCTTTCCGATCTCCTATACTCTTTTGAAA
ACGGGACGTTCGTAACCTCCCCGTATCGTTTCATGACCGTCCATGAGCCGAAGAAACGTCTTATCGGGATGCTCCCTTTC
CCGGATCATGTCCAGCACTGGGCGATGCTCAATGAGGTGGAGGATTATTTTACGAGATCCTTCTCCGCGTATACCTACGG
AGGGGTGAAAGGACGCGGTCCCCACGCCTACATGAGGATGATCCGGAAGGTCCTGAGAAAATATCCGGAACGTACCACCG
ACTATCTCCTGTGCGATATCCACCACTTCTATCCGACCGTCAATCACCCTGTACTGAAAAGCCAGCTCAGGACACGTATC
AAGGATAATCATTTATTGCGAAGGCTTGATGAGATCATCGATAGCGTCGAGGGGGATACCGGTATGTTTCCCGGCACGAA
GCTGGCGCAGTTCTTCTCGCTTGTCTATCTTTATCTTTTCGATCACGATTTGAAGCGGTGCTTCCATGTCGGGGAATGCC
CGGCTTTGGTTGAGTACTACACGAAAAGGTATATCGAGGAAAGTATCGCAACGGCCAAAACAGAACATGATTATGAGGAG
TTATCCAAAGGGATCCAATATCTCTCGGACAGGTTCAAGGGATATCTGAACCGTCTGGATTTCTGCTACCGTCTCGCCGA
TGATGTCCTGATACTGCATGAGGACACCGTATTCTTGCACCTTGTCATCGAGTGGATCGGTCTTTATTACGCTAACGAGC
TTAGGATCGGTCTTAACCCGAGATGGAAGATCGGGCACGTGACGGACGGTGTCGATACGGGGGGATACGTGCATTTCCCG
GATCACGTCCGTGTCCGGAAACGTAACAAGGTGGCTCTCTGCCGCCAGATAGCGAGATTGAGAAAGAAGGGTTTGCCGGA
CGAGGAGATAAGGAAGAGGGCCTCTTCCCGTATAGGCTTCATTCAACACGCTGATACGAGTAATCTATTAAATAAATTAG
GAATGGAAACACCAAGGAAAAGACTGGGACAGGTGATAAGGAATAAAAAAAGTCCGTGGGAGGATCTCCCGGCCGACCGG
AAAATGAGATTCGAGGATATACTTTATGATACCCGGATACCGGAGGATAAACGAGGGCTGGAGGATGATAAACTCATAGA
GTTGATTGATTATAAAATCGAGGATAGCAAGATCGAGAAAAACGAGGACGGCACGCCAAAGAAGTGCCTCGCCATACGTT
TCCGATGGAAAGGCGAGGAGCGTTACGCTTTCACCGGTTCCGCCGTCTTGATTGATCAGGCGCTCACGGACTTCTCTCAC
GAGGACTTGCCGGTGGATACCGTGATAAAGGTGCTCACCAACAAGTTCGGTAAGAAATTTTTCAGGTTCACTTGA

Upstream 100 bases:

>100_bases
AATCAAGGCTAAAGGTATAGTCCCGGTAGGTTGATAAACCGACGGCTCATGACCCGATGGCGATTGCAGACACTGGACAC
TAAAAGACACTTGGGACACC

Downstream 100 bases:

>100_bases
CCCGTTGGGATCGCTCTTGGCCGATCCTTCCGGGTCGGCTAAAAAACATTTAAATATATGGAGACAAGAGCGATTTACAC
GGAGAGAAAGACATTCGTAA

Product: putative reverse transcriptase

Products: NA

Alternate protein names: Reverse Transcriptase Family Protein; Reverse Transcriptase; Phage-Encoded Reverse Transcriptase; Retron-Type Reverse Transcriptase

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MRRKGDFSGDIARKENYYKAFDHASKNKHGKKAIIKFEADLEKNLSDLLYSFENGTFVTSPYRFMTVHEPKKRLIGMLPF
PDHVQHWAMLNEVEDYFTRSFSAYTYGGVKGRGPHAYMRMIRKVLRKYPERTTDYLLCDIHHFYPTVNHPVLKSQLRTRI
KDNHLLRRLDEIIDSVEGDTGMFPGTKLAQFFSLVYLYLFDHDLKRCFHVGECPALVEYYTKRYIEESIATAKTEHDYEE
LSKGIQYLSDRFKGYLNRLDFCYRLADDVLILHEDTVFLHLVIEWIGLYYANELRIGLNPRWKIGHVTDGVDTGGYVHFP
DHVRVRKRNKVALCRQIARLRKKGLPDEEIRKRASSRIGFIQHADTSNLLNKLGMETPRKRLGQVIRNKKSPWEDLPADR
KMRFEDILYDTRIPEDKRGLEDDKLIELIDYKIEDSKIEKNEDGTPKKCLAIRFRWKGEERYAFTGSAVLIDQALTDFSH
EDLPVDTVIKVLTNKFGKKFFRFT

Sequences:

>Translated_504_residues
MRRKGDFSGDIARKENYYKAFDHASKNKHGKKAIIKFEADLEKNLSDLLYSFENGTFVTSPYRFMTVHEPKKRLIGMLPF
PDHVQHWAMLNEVEDYFTRSFSAYTYGGVKGRGPHAYMRMIRKVLRKYPERTTDYLLCDIHHFYPTVNHPVLKSQLRTRI
KDNHLLRRLDEIIDSVEGDTGMFPGTKLAQFFSLVYLYLFDHDLKRCFHVGECPALVEYYTKRYIEESIATAKTEHDYEE
LSKGIQYLSDRFKGYLNRLDFCYRLADDVLILHEDTVFLHLVIEWIGLYYANELRIGLNPRWKIGHVTDGVDTGGYVHFP
DHVRVRKRNKVALCRQIARLRKKGLPDEEIRKRASSRIGFIQHADTSNLLNKLGMETPRKRLGQVIRNKKSPWEDLPADR
KMRFEDILYDTRIPEDKRGLEDDKLIELIDYKIEDSKIEKNEDGTPKKCLAIRFRWKGEERYAFTGSAVLIDQALTDFSH
EDLPVDTVIKVLTNKFGKKFFRFT
>Mature_504_residues
MRRKGDFSGDIARKENYYKAFDHASKNKHGKKAIIKFEADLEKNLSDLLYSFENGTFVTSPYRFMTVHEPKKRLIGMLPF
PDHVQHWAMLNEVEDYFTRSFSAYTYGGVKGRGPHAYMRMIRKVLRKYPERTTDYLLCDIHHFYPTVNHPVLKSQLRTRI
KDNHLLRRLDEIIDSVEGDTGMFPGTKLAQFFSLVYLYLFDHDLKRCFHVGECPALVEYYTKRYIEESIATAKTEHDYEE
LSKGIQYLSDRFKGYLNRLDFCYRLADDVLILHEDTVFLHLVIEWIGLYYANELRIGLNPRWKIGHVTDGVDTGGYVHFP
DHVRVRKRNKVALCRQIARLRKKGLPDEEIRKRASSRIGFIQHADTSNLLNKLGMETPRKRLGQVIRNKKSPWEDLPADR
KMRFEDILYDTRIPEDKRGLEDDKLIELIDYKIEDSKIEKNEDGTPKKCLAIRFRWKGEERYAFTGSAVLIDQALTDFSH
EDLPVDTVIKVLTNKFGKKFFRFT

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59333; Mature: 59333

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRKGDFSGDIARKENYYKAFDHASKNKHGKKAIIKFEADLEKNLSDLLYSFENGTFVTS
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEC
PYRFMTVHEPKKRLIGMLPFPDHVQHWAMLNEVEDYFTRSFSAYTYGGVKGRGPHAYMRM
CEEEEEEECCHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
IRKVLRKYPERTTDYLLCDIHHFYPTVNHPVLKSQLRTRIKDNHLLRRLDEIIDSVEGDT
HHHHHHHCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GMFPGTKLAQFFSLVYLYLFDHDLKRCFHVGECPALVEYYTKRYIEESIATAKTEHDYEE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
LSKGIQYLSDRFKGYLNRLDFCYRLADDVLILHEDTVFLHLVIEWIGLYYANELRIGLNP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCEEECCCC
RWKIGHVTDGVDTGGYVHFPDHVRVRKRNKVALCRQIARLRKKGLPDEEIRKRASSRIGF
CEEECCCCCCCCCCCEEECCCCHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
IQHADTSNLLNKLGMETPRKRLGQVIRNKKSPWEDLPADRKMRFEDILYDTRIPEDKRGL
EEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHCCCCCHHCCC
EDDKLIELIDYKIEDSKIEKNEDGTPKKCLAIRFRWKGEERYAFTGSAVLIDQALTDFSH
CHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCHHHHHHHHHHCCC
EDLPVDTVIKVLTNKFGKKFFRFT
CCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRKGDFSGDIARKENYYKAFDHASKNKHGKKAIIKFEADLEKNLSDLLYSFENGTFVTS
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEC
PYRFMTVHEPKKRLIGMLPFPDHVQHWAMLNEVEDYFTRSFSAYTYGGVKGRGPHAYMRM
CEEEEEEECCHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
IRKVLRKYPERTTDYLLCDIHHFYPTVNHPVLKSQLRTRIKDNHLLRRLDEIIDSVEGDT
HHHHHHHCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GMFPGTKLAQFFSLVYLYLFDHDLKRCFHVGECPALVEYYTKRYIEESIATAKTEHDYEE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
LSKGIQYLSDRFKGYLNRLDFCYRLADDVLILHEDTVFLHLVIEWIGLYYANELRIGLNP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCEEECCCC
RWKIGHVTDGVDTGGYVHFPDHVRVRKRNKVALCRQIARLRKKGLPDEEIRKRASSRIGF
CEEECCCCCCCCCCCEEECCCCHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
IQHADTSNLLNKLGMETPRKRLGQVIRNKKSPWEDLPADRKMRFEDILYDTRIPEDKRGL
EEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHCCCCCHHCCC
EDDKLIELIDYKIEDSKIEKNEDGTPKKCLAIRFRWKGEERYAFTGSAVLIDQALTDFSH
CHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCHHHHHHHHHHCCC
EDLPVDTVIKVLTNKFGKKFFRFT
CCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA