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The map label for this gene is rnfB [H]

Identifier: 150007171

GI number: 150007171

Start: 608507

End: 609439

Strand: Reverse

Name: rnfB [H]

Synonym: BDI_0516

Alternate gene names: 150007171

Gene position: 609439-608507 (Counterclockwise)

Preceding gene: 150007172

Following gene: 150007170

Centisome position: 12.67

GC content: 52.41

Gene sequence:

>933_bases
ATGATTTTAATTGCCGTTATTTCATTAGGAGCAATCGGGGCGGTCGGAGCGGTTTTCCTCTACGCTGCTTCCAAGAAATT
TGAAGTCTACGAAGATCCTCGCATCGCACAAGTACAGGAAGTCCTTCCCGGGGCGAACTGTGGAGGTTGCGGTTATCCGG
GTTGCGCCGGATTCGCAGGCGCTTGCGTAAAAGCTGACTCATTAGACGGATTGCTCTGCCCCGTTGGTGGTGGCCCGGTC
ATGGCCAAGGTCGCTACAATACTGGGTAAAGAGGCGGGTACAGCCGAACCCATGGTAGCCGTTGTCCGTTGCAACGGAAC
TTGTCAGGCCCGCCCACGTACAAACTCTTATGATGGAACGAAAAGTTGCGCCATCGCCTCTACCCTTTACGGAGGCGAGA
CGAATTGTTCTTTCGGTTGCCTAGGTTATGGCGACTGCGTGAACGCCTGCGCTTTCGACGCCATCCACATCAACCCGGCT
ACGGGAATCGCCGAGGTAGACGAGGAAAAATGTACTTCCTGTGGTGCTTGTGTGAAGGCTTGCCCGAAGAATATCATCGA
GCTAAGAAAGAAAGGACCTAAATCACGCCGGATTTACGTGTCTTGCGTAAATAAGGACAAGGGAGCCGCCGCTCGCAAGG
CTTGTGCCAACGCTTGTATCGGCTGTGGCAAATGTGCCAAGGAATGTCCGTTCGAGGCAATCACCGTAACAAATAACGTA
GCTTATATCGATTATACGAAGTGTCGTTTATGCCGCAAATGCGTGGCTGTATGTCCGACAGGAGCTATTCATGAGCTGAA
TTTCCCTCCTCGCAAGGAAGCCGCTCCCGCTCCGAAAGCGGAGACCGTGAAACCGGCGCCAAAGGCAGAGGCTACCGTGA
AACCGGAAGCCACACCGAAAGCTACAAGTGAAGAAAAAACAAATCTAAATTAA

Upstream 100 bases:

>100_bases
ATCGCTTTTACTGCCTTATTACTGTATACTATACTTAATGCGTGACAAACTAAAAAGACGATTTATATTTACTTTGAAAA
AACTTAATTGATAATATATC

Downstream 100 bases:

>100_bases
AATCTAATAGTATGCTAAGGACATTTCGAATCGGAGGTATACATCCCCCCGAGAATAAACTGTCTGCCGGTAAGAAAATT
ACGGCTCTCGCTACGCCTAA

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MILIAVISLGAIGAVGAVFLYAASKKFEVYEDPRIAQVQEVLPGANCGGCGYPGCAGFAGACVKADSLDGLLCPVGGGPV
MAKVATILGKEAGTAEPMVAVVRCNGTCQARPRTNSYDGTKSCAIASTLYGGETNCSFGCLGYGDCVNACAFDAIHINPA
TGIAEVDEEKCTSCGACVKACPKNIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNNV
AYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKEAAPAPKAETVKPAPKAEATVKPEATPKATSEEKTNLN

Sequences:

>Translated_310_residues
MILIAVISLGAIGAVGAVFLYAASKKFEVYEDPRIAQVQEVLPGANCGGCGYPGCAGFAGACVKADSLDGLLCPVGGGPV
MAKVATILGKEAGTAEPMVAVVRCNGTCQARPRTNSYDGTKSCAIASTLYGGETNCSFGCLGYGDCVNACAFDAIHINPA
TGIAEVDEEKCTSCGACVKACPKNIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNNV
AYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKEAAPAPKAETVKPAPKAEATVKPEATPKATSEEKTNLN
>Mature_310_residues
MILIAVISLGAIGAVGAVFLYAASKKFEVYEDPRIAQVQEVLPGANCGGCGYPGCAGFAGACVKADSLDGLLCPVGGGPV
MAKVATILGKEAGTAEPMVAVVRCNGTCQARPRTNSYDGTKSCAIASTLYGGETNCSFGCLGYGDCVNACAFDAIHINPA
TGIAEVDEEKCTSCGACVKACPKNIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNNV
AYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKEAAPAPKAETVKPAPKAEATVKPEATPKATSEEKTNLN

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=189, Percent_Identity=32.8042328042328, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 32047; Mature: 32047

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
8.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
9.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILIAVISLGAIGAVGAVFLYAASKKFEVYEDPRIAQVQEVLPGANCGGCGYPGCAGFAG
CEEEEEEHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHH
ACVKADSLDGLLCPVGGGPVMAKVATILGKEAGTAEPMVAVVRCNGTCQARPRTNSYDGT
HHEECCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCEEECCCCCCCCCCC
KSCAIASTLYGGETNCSFGCLGYGDCVNACAFDAIHINPATGIAEVDEEKCTSCGACVKA
CHHHHHHHHCCCCCCCCEECCCHHHHHHHHHCCEEEECCCCCCHHCCHHHHHHHHHHHHH
CPKNIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNNV
HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCE
AYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKEAAPAPKAETVKPAPKAEATVKPEATPK
EEEEHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
ATSEEKTNLN
CCCCCCCCCC
>Mature Secondary Structure
MILIAVISLGAIGAVGAVFLYAASKKFEVYEDPRIAQVQEVLPGANCGGCGYPGCAGFAG
CEEEEEEHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHH
ACVKADSLDGLLCPVGGGPVMAKVATILGKEAGTAEPMVAVVRCNGTCQARPRTNSYDGT
HHEECCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCEEECCCCCCCCCCC
KSCAIASTLYGGETNCSFGCLGYGDCVNACAFDAIHINPATGIAEVDEEKCTSCGACVKA
CHHHHHHHHCCCCCCCCEECCCHHHHHHHHHCCEEEECCCCCCHHCCHHHHHHHHHHHHH
CPKNIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNNV
HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCE
AYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKEAAPAPKAETVKPAPKAEATVKPEATPK
EEEEHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
ATSEEKTNLN
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA