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The map label for this gene is gidB

Identifier: 150007125

GI number: 150007125

Start: 541982

End: 542674

Strand: Reverse

Name: gidB

Synonym: BDI_0469

Alternate gene names: 150007125

Gene position: 542674-541982 (Counterclockwise)

Preceding gene: 150007126

Following gene: 150007124

Centisome position: 11.28

GC content: 47.62

Gene sequence:

>693_bases
ATGATAGATAAACCTATAAACAGATGTCCTATGGAACAAAATACAGAGAAATTCTCAATTCCCAATTCTCAATTTTCAAT
TCTCACATCTTATTTCCCCGATCTCACCGACCGGCAAAAAGAGCAATACGCCGCCCTATATGACCTATATACGGATTGGA
ACGCCAAGATCAACGTGATCTCACGGAAGGATATCGAGAACCTATATCCGCATCACGTGCTTCACTCGCTGGGTATCACC
GATATGCTGCGTTTCAAGCCGGGTTCCTCGGTGATGGATCTGGGTACGGGAGGCGGTTTTCCCGGCATCCCCTTGGCGAT
CTTATTCCCTGAGACCCATTTCCATCTGGTAGACAGCATCGGGAAAAAAATCAAGGTGGGACAAGCCGTGGCCGAGGCGA
TCGGGCTGGAGAACGTATCCTTCCGCCATTGCCGGGGCGAGGAGGAAAAGCAGCTTTTCGATTTCGTGGTAAGCCGTGCC
GTGATGCCTCTGGCGGATCTGGTAAAGATCGTCCGCAAGAATATAAAGAAAGAACAGATCAACGCATTGCCCAACGGATT
GATTTGTCTGAAAGGTGGAGAGCTGGCGCACGAGATATTGCCTTTCCGGAACCAAGCGATAAGCATGGATCTGAAAGACC
ATTTTAAAGAAGAGTTTTTTGAAACTAAAAAAGTAGTGTACGTACCCTTATGA

Upstream 100 bases:

>100_bases
GGCGTCACGAACGTCCATCTCCCTTACAAGGAAATCCGCTATTTGCTGCGGGATGACAGCCCGATAAGTCAGTTAATTGA
AAATTGAGAATTGAAAATTA

Downstream 100 bases:

>100_bases
TTACGATAAAATCTTTCGAAGTAAACTATTTCTCCGAGAATACTTACTTGCTATACGATGATACCAAGGAGGCAGTCCTT
ATCGATTGCGGCTGCCTGCG

Product: 16S rRNA methyltransferase GidB

Products: NA

Alternate protein names: 16S rRNA 7-methylguanosine methyltransferase; 16S rRNA m7G methyltransferase

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MIDKPINRCPMEQNTEKFSIPNSQFSILTSYFPDLTDRQKEQYAALYDLYTDWNAKINVISRKDIENLYPHHVLHSLGIT
DMLRFKPGSSVMDLGTGGGFPGIPLAILFPETHFHLVDSIGKKIKVGQAVAEAIGLENVSFRHCRGEEEKQLFDFVVSRA
VMPLADLVKIVRKNIKKEQINALPNGLICLKGGELAHEILPFRNQAISMDLKDHFKEEFFETKKVVYVPL

Sequences:

>Translated_230_residues
MIDKPINRCPMEQNTEKFSIPNSQFSILTSYFPDLTDRQKEQYAALYDLYTDWNAKINVISRKDIENLYPHHVLHSLGIT
DMLRFKPGSSVMDLGTGGGFPGIPLAILFPETHFHLVDSIGKKIKVGQAVAEAIGLENVSFRHCRGEEEKQLFDFVVSRA
VMPLADLVKIVRKNIKKEQINALPNGLICLKGGELAHEILPFRNQAISMDLKDHFKEEFFETKKVVYVPL
>Mature_230_residues
MIDKPINRCPMEQNTEKFSIPNSQFSILTSYFPDLTDRQKEQYAALYDLYTDWNAKINVISRKDIENLYPHHVLHSLGIT
DMLRFKPGSSVMDLGTGGGFPGIPLAILFPETHFHLVDSIGKKIKVGQAVAEAIGLENVSFRHCRGEEEKQLFDFVVSRA
VMPLADLVKIVRKNIKKEQINALPNGLICLKGGELAHEILPFRNQAISMDLKDHFKEEFFETKKVVYVPL

Specific function: Specifically methylates the N7 position of a guanosine in 16S rRNA

COG id: COG0357

COG function: function code M; Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA methyltransferase rsmG family

Homologues:

Organism=Escherichia coli, GI1790179, Length=136, Percent_Identity=38.9705882352941, Blast_Score=95, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSMG_PARD8 (A6L982)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001301868.1
- ProteinModelPortal:   A6L982
- SMR:   A6L982
- STRING:   A6L982
- GeneID:   5305624
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_0469
- eggNOG:   COG0357
- HOGENOM:   HBG308018
- OMA:   ICLKGGE
- ProtClustDB:   PRK00107
- BioCyc:   PDIS435591:BDI_0469-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00074
- InterPro:   IPR003682
- PIRSF:   PIRSF003078
- TIGRFAMs:   TIGR00138

Pfam domain/function: PF02527 GidB

EC number: 2.1.-.- [C]

Molecular weight: Translated: 26129; Mature: 26129

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKPINRCPMEQNTEKFSIPNSQFSILTSYFPDLTDRQKEQYAALYDLYTDWNAKINVI
CCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
SRKDIENLYPHHVLHSLGITDMLRFKPGSSVMDLGTGGGFPGIPLAILFPETHFHLVDSI
EHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEECCCCCCCCCCCEEEEECCHHHHHHHHH
GKKIKVGQAVAEAIGLENVSFRHCRGEEEKQLFDFVVSRAVMPLADLVKIVRKNIKKEQI
HHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NALPNGLICLKGGELAHEILPFRNQAISMDLKDHFKEEFFETKKVVYVPL
HCCCCCEEEEECCHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MIDKPINRCPMEQNTEKFSIPNSQFSILTSYFPDLTDRQKEQYAALYDLYTDWNAKINVI
CCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
SRKDIENLYPHHVLHSLGITDMLRFKPGSSVMDLGTGGGFPGIPLAILFPETHFHLVDSI
EHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEECCCCCCCCCCCEEEEECCHHHHHHHHH
GKKIKVGQAVAEAIGLENVSFRHCRGEEEKQLFDFVVSRAVMPLADLVKIVRKNIKKEQI
HHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NALPNGLICLKGGELAHEILPFRNQAISMDLKDHFKEEFFETKKVVYVPL
HCCCCCEEEEECCHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA