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The map label for this gene is rplY

Identifier: 150006997

GI number: 150006997

Start: 380854

End: 381438

Strand: Reverse

Name: rplY

Synonym: BDI_0333

Alternate gene names: 150006997

Gene position: 381438-380854 (Counterclockwise)

Preceding gene: 150006998

Following gene: 150006996

Centisome position: 7.93

GC content: 43.42

Gene sequence:

>585_bases
ATGAAGACATTTGAGTTAGAAGGAAAAGGAAGAGAGATCGTCGCTCGTTCCGCTGATCAGAAAAGAGCCTTGAAGGCAAT
GCGTAAGAACAATGAAATTCCCGCTGTATTATACGGTGGCGAAAAAGTAACTCACTTCACGGTTACAAAAGAAGCCGTTC
GTAAGTTGGTTTACACTCCGGAGATTTTCGTTGTTGAGTTAAGCATTGACGGTAACAAGACGATGGCAATCGTTAAGGAC
ATGCAGTTCCAACCTGTAACTGACGAAATCCTTCACATGGACTTCTTGGAAGTATCTAAGGACAAAGCCGTAGTAATGGA
AGTTCCGGTTGTTTTGGAAGGTCACGCAGAAGGTGTTAAAGCCGGTGGTAAGTTGTCTCTTCAAATGAGAAAACTGAAAG
TGAAAGCTATATACGATCAAATCCCTGAAAAGTTGACGATTAATGTGGATCACCTTGGCTTAGGTAAGACTATGCAGGTA
GGTGCTTTGCACTTCGAAGGTCTTGAATTGATGAACGCTAAAAACGCTGTTGTTTGCGCCGTTCAATTGACTCGTGCCGC
TCGTGGTGCTCAGGCTAAAGGATAA

Upstream 100 bases:

>100_bases
ACAAAAATCGTATCTTTGCACCGCTTTTTAGCCCCGTACCGTGTGATGGGAAATTAGGAAGCAAAATAACTAATTTTGAG
TAACACAAAAATTAAAGAAA

Downstream 100 bases:

>100_bases
TCTGAGGTAAAAACATTATTACAATACATGAAGGGGAGGATATTCATAGAATGTTCTTCCCCTTTCTTTTATAGATTCGA
GGATAATGAAATATTTGATA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MKTFELEGKGREIVARSADQKRALKAMRKNNEIPAVLYGGEKVTHFTVTKEAVRKLVYTPEIFVVELSIDGNKTMAIVKD
MQFQPVTDEILHMDFLEVSKDKAVVMEVPVVLEGHAEGVKAGGKLSLQMRKLKVKAIYDQIPEKLTINVDHLGLGKTMQV
GALHFEGLELMNAKNAVVCAVQLTRAARGAQAKG

Sequences:

>Translated_194_residues
MKTFELEGKGREIVARSADQKRALKAMRKNNEIPAVLYGGEKVTHFTVTKEAVRKLVYTPEIFVVELSIDGNKTMAIVKD
MQFQPVTDEILHMDFLEVSKDKAVVMEVPVVLEGHAEGVKAGGKLSLQMRKLKVKAIYDQIPEKLTINVDHLGLGKTMQV
GALHFEGLELMNAKNAVVCAVQLTRAARGAQAKG
>Mature_194_residues
MKTFELEGKGREIVARSADQKRALKAMRKNNEIPAVLYGGEKVTHFTVTKEAVRKLVYTPEIFVVELSIDGNKTMAIVKD
MQFQPVTDEILHMDFLEVSKDKAVVMEVPVVLEGHAEGVKAGGKLSLQMRKLKVKAIYDQIPEKLTINVDHLGLGKTMQV
GALHFEGLELMNAKNAVVCAVQLTRAARGAQAKG

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_PARD8 (A6L8V4)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001301740.1
- ProteinModelPortal:   A6L8V4
- SMR:   A6L8V4
- STRING:   A6L8V4
- GeneID:   5305488
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_0333
- eggNOG:   COG1825
- HOGENOM:   HBG731986
- OMA:   IRCINAV
- ProtClustDB:   PRK05618
- BioCyc:   PDIS435591:BDI_0333-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 21384; Mature: 21384

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFELEGKGREIVARSADQKRALKAMRKNNEIPAVLYGGEKVTHFTVTKEAVRKLVYTP
CCEEEECCCCCEEEECCCCHHHHHHHHHCCCCCCEEEECCCEEEEEEECHHHHHHHHCCC
EIFVVELSIDGNKTMAIVKDMQFQPVTDEILHMDFLEVSKDKAVVMEVPVVLEGHAEGVK
CEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECEEEECCCCCCC
AGGKLSLQMRKLKVKAIYDQIPEKLTINVDHLGLGKTMQVGALHFEGLELMNAKNAVVCA
CCCEEEEEEEHHHHHHHHHHCCCEEEEEEECCCCCCEEEECEEEECCEEEECCCCEEEEE
VQLTRAARGAQAKG
EEEHHHHCCCCCCC
>Mature Secondary Structure
MKTFELEGKGREIVARSADQKRALKAMRKNNEIPAVLYGGEKVTHFTVTKEAVRKLVYTP
CCEEEECCCCCEEEECCCCHHHHHHHHHCCCCCCEEEECCCEEEEEEECHHHHHHHHCCC
EIFVVELSIDGNKTMAIVKDMQFQPVTDEILHMDFLEVSKDKAVVMEVPVVLEGHAEGVK
CEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECEEEECCCCCCC
AGGKLSLQMRKLKVKAIYDQIPEKLTINVDHLGLGKTMQVGALHFEGLELMNAKNAVVCA
CCCEEEEEEEHHHHHHHHHHCCCEEEEEEECCCCCCEEEECEEEECCEEEECCCCEEEEE
VQLTRAARGAQAKG
EEEHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA