Click here to switch to the map view.

The map label for this gene is spsC [H]

Identifier: 150006511

GI number: 150006511

Start: 4962466

End: 4963737

Strand: Reverse

Name: spsC [H]

Synonym: BVU_4031

Alternate gene names: 150006511

Gene position: 4963737-4962466 (Counterclockwise)

Preceding gene: 150006512

Following gene: 150006510

Centisome position: 96.14

GC content: 33.88

Gene sequence:

>1272_bases
ATGAAAAAAATGTTTAGACTATTGTTTACGTCTGAAATCAGTAGCTTTATTTCTCCAAGTATTGATATATCAGAAAAACA
GTCAGACTATGAAGCACTGATAGAGGCTCCTAATCTTGATTATGTTAATCGCTATGAAAAAGAACTAAGCCAATTTCTTG
GAGGAGGGCATGTCGTGACTTTCGCATCAGGACGTATGTCATTCTATTCTTTATTAAAAAGCTGGGGAATAAGAGAAGGC
GATGAAGTTGCTCTTACAGGATTTACTTGTGCTGTTATGGCTAATGCTGTTTTGCGAACTGGAGCAACTCCAATTTATGT
GGATATCGACAAGGATACCTTAGGAATGTCTGCAGAATCTTTAGTGTCCAAAATTACGAATCGGACAAAAGTAGTTGTGG
CTCAGCATTCTTTTGGAATTCCATGTAAGATTGATAAAATAAAGGAGATTGCTAAATCTCATAGTTGCTATTTAGTGGAA
GATTGTGCGTTGACCTTTGGTTCAAAATATAAAAGTATTATAGTTGGCAATTATGGTGATGCTGCAATATTTTCAACAGA
TCATACCAAACCTCTTAATACACTTATAGGAGGCTTTGTTTATACTAATGATATAGACATAGCTACATCTATTCGGGCAA
TGCGTGATGATTGTGGGGATTTAAGTAACGAACATCAGCGAATGATCTTAAAGACTTATATTGATGAACACCGCATAGAA
ACTGTAAATCATAAAATATACATAATGCGGAACTATAAAAAGGCTTTGATGAATAAGCTACATATTCATAATGAAATATC
TCCTTATTTGGAGTTGGAAACATCTGCCAAAATCGCAATAAACCCTTATTACAGTTATCCTGCTAAACTACCTTCTGTTT
TGGCAAAGATTGGATTACATGTTCTTGAACAATATAAAGCTAATATTCATCAAAGGCAGAGTTGGCTTAAAGAAATTTTA
CAGGTTGTAGAAAAAAAAGAAGATATGCCTGCAGCTTATTATGATACTGGTTGTGACATTATTCCTTTGCGTATTGCTTA
TTCAACTCATTTCGCTCTTACTGTATTCTCATACATTGATGATTGGATTTGGTTTAAAACTCCGATTGTTGCAACAAAAG
AAAATATATGTGACTTTGGATATCATTGGGGAGGATGCCCAGTTGCGGAAAAAATAGGAAAATCGATTATGAATCTACCG
GTTATTATAGATTCAAAACAACAAAATATCTTTTTGCGGAATATAAAAAAAACATATAGTTATGGCATTTAG

Upstream 100 bases:

>100_bases
TAATAGAGAAATGTATTCATTGGTGAAGTCAATTATTAGACGTTGAATAGAAAGGAATTATGGAAAACGAAACCATTTAG
AGATTATGATAATATCAAAA

Downstream 100 bases:

>100_bases
TAATATTTATAAGAATAAGAAGGTTATTATTACTGGTAATACTGGGTTTAAAGGGACTTGGCTGTCTACATGGCTTAAAA
TGATGGGAGCTGAGGTTTAT

Product: putative pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MKKMFRLLFTSEISSFISPSIDISEKQSDYEALIEAPNLDYVNRYEKELSQFLGGGHVVTFASGRMSFYSLLKSWGIREG
DEVALTGFTCAVMANAVLRTGATPIYVDIDKDTLGMSAESLVSKITNRTKVVVAQHSFGIPCKIDKIKEIAKSHSCYLVE
DCALTFGSKYKSIIVGNYGDAAIFSTDHTKPLNTLIGGFVYTNDIDIATSIRAMRDDCGDLSNEHQRMILKTYIDEHRIE
TVNHKIYIMRNYKKALMNKLHIHNEISPYLELETSAKIAINPYYSYPAKLPSVLAKIGLHVLEQYKANIHQRQSWLKEIL
QVVEKKEDMPAAYYDTGCDIIPLRIAYSTHFALTVFSYIDDWIWFKTPIVATKENICDFGYHWGGCPVAEKIGKSIMNLP
VIIDSKQQNIFLRNIKKTYSYGI

Sequences:

>Translated_423_residues
MKKMFRLLFTSEISSFISPSIDISEKQSDYEALIEAPNLDYVNRYEKELSQFLGGGHVVTFASGRMSFYSLLKSWGIREG
DEVALTGFTCAVMANAVLRTGATPIYVDIDKDTLGMSAESLVSKITNRTKVVVAQHSFGIPCKIDKIKEIAKSHSCYLVE
DCALTFGSKYKSIIVGNYGDAAIFSTDHTKPLNTLIGGFVYTNDIDIATSIRAMRDDCGDLSNEHQRMILKTYIDEHRIE
TVNHKIYIMRNYKKALMNKLHIHNEISPYLELETSAKIAINPYYSYPAKLPSVLAKIGLHVLEQYKANIHQRQSWLKEIL
QVVEKKEDMPAAYYDTGCDIIPLRIAYSTHFALTVFSYIDDWIWFKTPIVATKENICDFGYHWGGCPVAEKIGKSIMNLP
VIIDSKQQNIFLRNIKKTYSYGI
>Mature_423_residues
MKKMFRLLFTSEISSFISPSIDISEKQSDYEALIEAPNLDYVNRYEKELSQFLGGGHVVTFASGRMSFYSLLKSWGIREG
DEVALTGFTCAVMANAVLRTGATPIYVDIDKDTLGMSAESLVSKITNRTKVVVAQHSFGIPCKIDKIKEIAKSHSCYLVE
DCALTFGSKYKSIIVGNYGDAAIFSTDHTKPLNTLIGGFVYTNDIDIATSIRAMRDDCGDLSNEHQRMILKTYIDEHRIE
TVNHKIYIMRNYKKALMNKLHIHNEISPYLELETSAKIAINPYYSYPAKLPSVLAKIGLHVLEQYKANIHQRQSWLKEIL
QVVEKKEDMPAAYYDTGCDIIPLRIAYSTHFALTVFSYIDDWIWFKTPIVATKENICDFGYHWGGCPVAEKIGKSIMNLP
VIIDSKQQNIFLRNIKKTYSYGI

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=210, Percent_Identity=30, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI2367285, Length=158, Percent_Identity=32.2784810126582, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 47952; Mature: 47952

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMFRLLFTSEISSFISPSIDISEKQSDYEALIEAPNLDYVNRYEKELSQFLGGGHVVT
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE
FASGRMSFYSLLKSWGIREGDEVALTGFTCAVMANAVLRTGATPIYVDIDKDTLGMSAES
EECCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHH
LVSKITNRTKVVVAQHSFGIPCKIDKIKEIAKSHSCYLVEDCALTFGSKYKSIIVGNYGD
HHHHHCCCEEEEEEECCCCCCEEHHHHHHHHHCCCEEEEEHHHHHHCCCCCEEEEECCCC
AAIFSTDHTKPLNTLIGGFVYTNDIDIATSIRAMRDDCGDLSNEHQRMILKTYIDEHRIE
EEEEECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHE
TVNHKIYIMRNYKKALMNKLHIHNEISPYLELETSAKIAINPYYSYPAKLPSVLAKIGLH
EECCEEEEEECHHHHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHH
VLEQYKANIHQRQSWLKEILQVVEKKEDMPAAYYDTGCDIIPLRIAYSTHFALTVFSYID
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEEEHHHHHHHHHHHHH
DWIWFKTPIVATKENICDFGYHWGGCPVAEKIGKSIMNLPVIIDSKQQNIFLRNIKKTYS
HHHHHCCCCEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHC
YGI
CCC
>Mature Secondary Structure
MKKMFRLLFTSEISSFISPSIDISEKQSDYEALIEAPNLDYVNRYEKELSQFLGGGHVVT
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE
FASGRMSFYSLLKSWGIREGDEVALTGFTCAVMANAVLRTGATPIYVDIDKDTLGMSAES
EECCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHH
LVSKITNRTKVVVAQHSFGIPCKIDKIKEIAKSHSCYLVEDCALTFGSKYKSIIVGNYGD
HHHHHCCCEEEEEEECCCCCCEEHHHHHHHHHCCCEEEEEHHHHHHCCCCCEEEEECCCC
AAIFSTDHTKPLNTLIGGFVYTNDIDIATSIRAMRDDCGDLSNEHQRMILKTYIDEHRIE
EEEEECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHE
TVNHKIYIMRNYKKALMNKLHIHNEISPYLELETSAKIAINPYYSYPAKLPSVLAKIGLH
EECCEEEEEECHHHHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHH
VLEQYKANIHQRQSWLKEILQVVEKKEDMPAAYYDTGCDIIPLRIAYSTHFALTVFSYID
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEEEHHHHHHHHHHHHH
DWIWFKTPIVATKENICDFGYHWGGCPVAEKIGKSIMNLPVIIDSKQQNIFLRNIKKTYS
HHHHHCCCCEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHC
YGI
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]