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The map label for this gene is xerD [C]

Identifier: 150006222

GI number: 150006222

Start: 4607456

End: 4608679

Strand: Reverse

Name: xerD [C]

Synonym: BVU_3733

Alternate gene names: 150006222

Gene position: 4608679-4607456 (Counterclockwise)

Preceding gene: 150006223

Following gene: 150006221

Centisome position: 89.26

GC content: 43.79

Gene sequence:

>1224_bases
ATGAGAAGTACATACAAGCAGTTTTATTATATCAACCGTGGCAGAGTAAAGGCAGACGGAACCACATCTATATTTTGCCG
TATCACAATTGACGGCAAAGTGTCAGCCATAGCAACAGGTCTTTACTGTGCTCCCGAAGAATGGGACACGAAAAAAGGTG
AAGCCAAGAATGCAAGAGTGAACGGACAACTGCAAGCGTTCAGACTAAGAATTGACGAAGCCTACGAGCAGGCAACAAAG
GAAAAGGGCATCGTTACCGCCGAGATTCTGAAGAATGTTATTGTTGATGCAAATACTATCCCGATGACATTGCTTGCCAC
TGGCGAGGAGGAGCGTGAACGCCTTAGGCTGCGCTCCATCCGTATTAACTCAACATCTTCTTATCGCCAATCTAAGACAT
CGCAGCTAAACTTGCGAGAGTTCATCGGGTTACGAGGAATGAATGACATTACATTTGAAGATTTGACTGAGGAATTTGGC
AAATCTTATAAGTTGTTCTTGATTGGCAAAGGGTATAGTGCATCCAATACGAACCATAATCTTTGTTGGCTGCAACGCTT
GGTTTATATCGCTGTTGACAGAGGTCTGCTGAAATTCAATCCACTGGAAGATGTCGGATATGAAAAGAAAGGCTCACCAA
AGCGTAGACATATATCCAGAAATGACTTGCTGCTCATTATGGAGACTCCTATGGAAGATAAGGCTTTGGAGTTGGCACGA
AGAATGTTTGTTTTCTCCAGCCTTACAGGTTTGGCTTATGTCGATTTACGTAACCTGTATCCACACCATATCGGGATGAC
GGCAGACGGTAGAAAATACATTCGTGAGAAAAGAGCAAAGACCAACAACGAAGCGTTCATTCCCTTGCATCCGATAGCTG
AACAAATAATGTCGCTATACAATACAGCGGATGATAGCAAACCTGTTTTCCCTCTTTCTTCACGTGATTCCATGTGGTTT
GAATTTCATTCACTCGGTGTGGCTTTGGGTATAAATGAGAATCTTACCGCACACGTTGCAAGACATACATTCGGAGTAAA
CATGGTTACTTCGGGCATATCAATGGAAAGCATCGCCAAGATGATGGGGCATTCCAACCTGCGAAGCACCCAGGTCTATG
CTGTCATCACCGATGACAAGATATCCAAGGACATGGACAAGCTGATGCTGCGCAGAGAAACAAAAGAAACTGACCAGAAT
AAAAATAAGGAGGACGGGAAATGA

Upstream 100 bases:

>100_bases
CCGAAAAAGCTATTTGAGGATATGGACAAGTTCATCGAAGCCAACAAAGACTTCAAGTTTGTCCTGTAATATTTTCACAA
AATAAGAAAGGAACATAACA

Downstream 100 bases:

>100_bases
ACAGAGGAGTTATAACTATCAGCGAGAGCGGAACGGTATCCATGCCGACCTATACTGTATGGATGACCTTGCAGGAGATT
GCCGACATGTATAATGTATT

Product: integrase

Products: NA

Alternate protein names: Tyrosine Type Site-Specific Recombinase; Transposase; Integrase Family Protein; Phage Integrase Family Protein; Site-Specific Recombinase; Site-Specific Recombinase Phage Integrase Family; Bacteriophage Integrase; Phage Integrase; Prophage; Integrase/Recombinase; Mobilizable Transposon Int Protein; Tyrosine Recombinase XerD; Mobilizable Transposon Protein Int Protein; Integrase/Transposase

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MRSTYKQFYYINRGRVKADGTTSIFCRITIDGKVSAIATGLYCAPEEWDTKKGEAKNARVNGQLQAFRLRIDEAYEQATK
EKGIVTAEILKNVIVDANTIPMTLLATGEEERERLRLRSIRINSTSSYRQSKTSQLNLREFIGLRGMNDITFEDLTEEFG
KSYKLFLIGKGYSASNTNHNLCWLQRLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIMETPMEDKALELAR
RMFVFSSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQIMSLYNTADDSKPVFPLSSRDSMWF
EFHSLGVALGINENLTAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDKLMLRRETKETDQN
KNKEDGK

Sequences:

>Translated_407_residues
MRSTYKQFYYINRGRVKADGTTSIFCRITIDGKVSAIATGLYCAPEEWDTKKGEAKNARVNGQLQAFRLRIDEAYEQATK
EKGIVTAEILKNVIVDANTIPMTLLATGEEERERLRLRSIRINSTSSYRQSKTSQLNLREFIGLRGMNDITFEDLTEEFG
KSYKLFLIGKGYSASNTNHNLCWLQRLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIMETPMEDKALELAR
RMFVFSSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQIMSLYNTADDSKPVFPLSSRDSMWF
EFHSLGVALGINENLTAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDKLMLRRETKETDQN
KNKEDGK
>Mature_407_residues
MRSTYKQFYYINRGRVKADGTTSIFCRITIDGKVSAIATGLYCAPEEWDTKKGEAKNARVNGQLQAFRLRIDEAYEQATK
EKGIVTAEILKNVIVDANTIPMTLLATGEEERERLRLRSIRINSTSSYRQSKTSQLNLREFIGLRGMNDITFEDLTEEFG
KSYKLFLIGKGYSASNTNHNLCWLQRLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIMETPMEDKALELAR
RMFVFSSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQIMSLYNTADDSKPVFPLSSRDSMWF
EFHSLGVALGINENLTAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDKLMLRRETKETDQN
KNKEDGK

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46452; Mature: 46452

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSTYKQFYYINRGRVKADGTTSIFCRITIDGKVSAIATGLYCAPEEWDTKKGEAKNARV
CCCCEEEEEEEECCEEEECCCEEEEEEEEECCCEEEHEECEEECCCCCCCCCCCCCCCEE
NGQLQAFRLRIDEAYEQATKEKGIVTAEILKNVIVDANTIPMTLLATGEEERERLRLRSI
CCCEEEEEEHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHEE
RINSTSSYRQSKTSQLNLREFIGLRGMNDITFEDLTEEFGKSYKLFLIGKGYSASNTNHN
EECCCCHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCH
LCWLQRLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIMETPMEDKALELAR
HHHHHHHHHHHHCCCCEEECCHHHCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHH
RMFVFSSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQIMSLY
HHHHHHHHCCCEEEEHHHCCCHHCCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHH
NTADDSKPVFPLSSRDSMWFEFHSLGVALGINENLTAHVARHTFGVNMVTSGISMESIAK
HCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCHHHCCCCCHHHHHH
MMGHSNLRSTQVYAVITDDKISKDMDKLMLRRETKETDQNKNKEDGK
HHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRSTYKQFYYINRGRVKADGTTSIFCRITIDGKVSAIATGLYCAPEEWDTKKGEAKNARV
CCCCEEEEEEEECCEEEECCCEEEEEEEEECCCEEEHEECEEECCCCCCCCCCCCCCCEE
NGQLQAFRLRIDEAYEQATKEKGIVTAEILKNVIVDANTIPMTLLATGEEERERLRLRSI
CCCEEEEEEHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHEE
RINSTSSYRQSKTSQLNLREFIGLRGMNDITFEDLTEEFGKSYKLFLIGKGYSASNTNHN
EECCCCHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCH
LCWLQRLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIMETPMEDKALELAR
HHHHHHHHHHHHCCCCEEECCHHHCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHH
RMFVFSSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQIMSLY
HHHHHHHHCCCEEEEHHHCCCHHCCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHH
NTADDSKPVFPLSSRDSMWFEFHSLGVALGINENLTAHVARHTFGVNMVTSGISMESIAK
HCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCHHHCCCCCHHHHHH
MMGHSNLRSTQVYAVITDDKISKDMDKLMLRRETKETDQNKNKEDGK
HHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA