Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 150006223

GI number: 150006223

Start: 4608711

End: 4609949

Strand: Reverse

Name: xerD [C]

Synonym: BVU_3734

Alternate gene names: 150006223

Gene position: 4609949-4608711 (Counterclockwise)

Preceding gene: 150006228

Following gene: 150006222

Centisome position: 89.28

GC content: 47.46

Gene sequence:

>1239_bases
ATGAAAGTTGAAAAATTCAAGGTGCTGCTCTACCTTAAAAAGAGCGGATTGGACAAGAACGGTAAGGCTCCCATCATGGG
ACGCATCACCCTCAACCGAACAATGGCGCAGTTCGGTTGCAAGTTGTCATGTACGCCAAAGTTATGGAATCCACGTGAGA
GCAGACTTGACGGCAAGAGCAAGGAGGCTGTGGAAGTGAACGCCAAGATTGACAAGCTGTTGCTGGCAATAAACTCAGCC
TACGAGTCACTTGTGGAGCGCAAGACGGATTTTGACGCAAAGGCGATAAAGGATCTGTTTCAATGCAGTGCAGACACTCA
GATGACCTTGTTGAAGCAGCTTGACGCCATCATTGCGGACATTGAGTCAAGAATCGGCATCGACTACAAGAAAGGCACGC
TGCCAAACTACCAGTACACTCGCCTGACATTGGGATTGTTCGTCAAGAAGCGTTATGGAACTGACGATGTGGCATTCGGT
GAGCTTGACGAGCAGTTTATCCGTGAGTACATGGACTTTTGCTTGGACGAGAGAGGTCTTGCACTTGATACAGTCCGCCA
CTATCTCGCCATCTTGAAGAAGACCTGCCGAATAGCTTTCAAGGCAGGACACTCCGAGCGTTATCATTTCATGCACTTCA
AGCTACCTCAAAAGAAAGAGAATCCACCAAAGGCATTGACACGTGAGGACTTCCTGAAAATTCGTGACCTCGAAATACCA
GAGCGAAGAAAATCGTTGGCTTTGACCCGTGACCTTTTTCTTTTCGCCTGCTATACAGGCACGGCTTATGCCGATACGGT
TTCCATCACGGAAGAAAACCTCTTTCGTGATGAGGAGGGCAGCCTTTGGCTGAAATACCATAGAAAGAAGAACAAGATGC
TTGCACGTGTGAAGTTACTGCCAGAGGCGCTTGCCATGTTGGAGAAATACAAAGACCCGACAAGACCTACTCTTTTACCG
CCACAGGAATTTCGAGTGCTGAGAGGTAACATGAAAAGTCTCCGAGTACTATCTGGCATATCTGGCATAAGTATGGATTT
GGTCTATCATGTTGGACGGCACAGTTTCGCATCGCTCGTTACGCTCGAAGAAGGTGTTCCGATAGAGACTATCAGCAGAA
TGCTTGGTCACAGCAACATTCAGACCACGCAAATCTATGCACGTGTCACCCCGAAAAAGCTATTTGAGGATATGGACAAG
TTCATCGAAGCCAACAAAGACTTCAAGTTTGTCCTGTAA

Upstream 100 bases:

>100_bases
AATAGTTTGTCACCAGTGTTTGTTGCACTGTTCTGCACAACTTTCAATGACGGAGAATGCTTACTGATTGATTATTTTTG
CAAACTAAAAAAGTAAGCAG

Downstream 100 bases:

>100_bases
TATTTTCACAAAATAAGAAAGGAACATAACAATGAGAAGTACATACAAGCAGTTTTATTATATCAACCGTGGCAGAGTAA
AGGCAGACGGAACCACATCT

Product: transposase

Products: NA

Alternate protein names: Tyrosine Type Site-Specific Recombinase; Transposase; Integrase Family Protein; Phage Integrase Family Protein; Site-Specific Recombinase; Bacteriophage Integrase; Site-Specific Recombinase Phage Integrase Family; Phage Integrase; Integrase/Transposase; Prophage; Tyrosine Site-Specific Recombinase; Integrase Protein; Integrase/Site-Specific Recombinase; Mobilizable Transposon Protein Int Protein

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MKVEKFKVLLYLKKSGLDKNGKAPIMGRITLNRTMAQFGCKLSCTPKLWNPRESRLDGKSKEAVEVNAKIDKLLLAINSA
YESLVERKTDFDAKAIKDLFQCSADTQMTLLKQLDAIIADIESRIGIDYKKGTLPNYQYTRLTLGLFVKKRYGTDDVAFG
ELDEQFIREYMDFCLDERGLALDTVRHYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFLKIRDLEIP
ERRKSLALTRDLFLFACYTGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLLPEALAMLEKYKDPTRPTLLP
PQEFRVLRGNMKSLRVLSGISGISMDLVYHVGRHSFASLVTLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDK
FIEANKDFKFVL

Sequences:

>Translated_412_residues
MKVEKFKVLLYLKKSGLDKNGKAPIMGRITLNRTMAQFGCKLSCTPKLWNPRESRLDGKSKEAVEVNAKIDKLLLAINSA
YESLVERKTDFDAKAIKDLFQCSADTQMTLLKQLDAIIADIESRIGIDYKKGTLPNYQYTRLTLGLFVKKRYGTDDVAFG
ELDEQFIREYMDFCLDERGLALDTVRHYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFLKIRDLEIP
ERRKSLALTRDLFLFACYTGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLLPEALAMLEKYKDPTRPTLLP
PQEFRVLRGNMKSLRVLSGISGISMDLVYHVGRHSFASLVTLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDK
FIEANKDFKFVL
>Mature_412_residues
MKVEKFKVLLYLKKSGLDKNGKAPIMGRITLNRTMAQFGCKLSCTPKLWNPRESRLDGKSKEAVEVNAKIDKLLLAINSA
YESLVERKTDFDAKAIKDLFQCSADTQMTLLKQLDAIIADIESRIGIDYKKGTLPNYQYTRLTLGLFVKKRYGTDDVAFG
ELDEQFIREYMDFCLDERGLALDTVRHYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFLKIRDLEIP
ERRKSLALTRDLFLFACYTGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLLPEALAMLEKYKDPTRPTLLP
PQEFRVLRGNMKSLRVLSGISGISMDLVYHVGRHSFASLVTLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDK
FIEANKDFKFVL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47533; Mature: 47533

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVEKFKVLLYLKKSGLDKNGKAPIMGRITLNRTMAQFGCKLSCTPKLWNPRESRLDGKS
CCCCCEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHCCCEECCCCCCCCCHHHCCCCC
KEAVEVNAKIDKLLLAINSAYESLVERKTDFDAKAIKDLFQCSADTQMTLLKQLDAIIAD
CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IESRIGIDYKKGTLPNYQYTRLTLGLFVKKRYGTDDVAFGELDEQFIREYMDFCLDERGL
HHHHCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
ALDTVRHYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFLKIRDLEIP
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCC
ERRKSLALTRDLFLFACYTGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLL
HHHHHHHHHHHHHHEEEECCCCCCCEEEECHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
PEALAMLEKYKDPTRPTLLPPQEFRVLRGNMKSLRVLSGISGISMDLVYHVGRHSFASLV
HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHE
TLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDKFIEANKDFKFVL
EECCCCCHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MKVEKFKVLLYLKKSGLDKNGKAPIMGRITLNRTMAQFGCKLSCTPKLWNPRESRLDGKS
CCCCCEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHCCCEECCCCCCCCCHHHCCCCC
KEAVEVNAKIDKLLLAINSAYESLVERKTDFDAKAIKDLFQCSADTQMTLLKQLDAIIAD
CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IESRIGIDYKKGTLPNYQYTRLTLGLFVKKRYGTDDVAFGELDEQFIREYMDFCLDERGL
HHHHCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
ALDTVRHYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFLKIRDLEIP
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCC
ERRKSLALTRDLFLFACYTGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLL
HHHHHHHHHHHHHHEEEECCCCCCCEEEECHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
PEALAMLEKYKDPTRPTLLPPQEFRVLRGNMKSLRVLSGISGISMDLVYHVGRHSFASLV
HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHE
TLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDKFIEANKDFKFVL
EECCCCCHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA