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The map label for this gene is cirA [H]

Identifier: 150005620

GI number: 150005620

Start: 3930894

End: 3932954

Strand: Reverse

Name: cirA [H]

Synonym: BVU_3108

Alternate gene names: 150005620

Gene position: 3932954-3930894 (Counterclockwise)

Preceding gene: 150005622

Following gene: 150005619

Centisome position: 76.17

GC content: 39.93

Gene sequence:

>2061_bases
ATGAGGTATTTACTTCCTGCTATTCTACTATTAGGTACACAAATTGCAAGTGCCCAAAGTATTCTCAAAGATAAAGACGA
TAAAGAATTGTCCGTATTACTGAATGAAGTGGTCATCACGGGTACAGGTACTGAACATTATCTGAAAGATGCTCCCGTAC
AGACTGAAGTCATAACCAGCAAAGCTTTGGAACAATATCAGGCACGCAGTATAGACGATTTGCTCAGTGGTCTTAGTCCT
TCATTGACCTTTCATGATGGTGATATGGGGAGCCATATCCAACTAAACGGATTGAACAATGACTATATCCTGATCATGAT
AAATGGAAAAAGAATGAATGGCGATGTAGGAGGGCAAAACGACTTGAATCAATTAAATCCAGCTAATATAGAACGCATAG
AGATTGTAAAAGGGGCCGCTTCTTCACTTTATGGCAGTGACGCAATAGCCGGAGTTATCAATATCATAACCAAACGTAAC
CGTGAAAAAATGGAGCTCACCAACACATCCCGCATAGGTGAATATGGCGATATACGTCAAAGTACCAGTTTCGGCTTTAA
CTATAGAAAGATAAAATCTGTAACCGGAATCAACTTCCGGCATACCGATGGCTGGCGGAATACAGACCTACAGTGGGATC
AGAATCAATTGAAATCCGGCTCTACTATGTTGACCGTAAACCGTTCTTCAAACTATACCCTGTCCGAGAACATTGAATGG
CAAGTCAATCGCAAACTAGACCTCACTGCAGAAGGCACTTATTATGAGCGTTGGGTAATGCGTACACACGGTCCTTGGAA
ATATCAAGCCAACGATTTTTATTATCGCAACTATACATTTGCAGTAGGAAGTAAATATAAATTAGGAAAACGGAATTATC
TGACAGCAGACCTATCTTATGGCAGATACGGTTACTTCTATGACTATAAGCTAAACGAGCATACTGATTATTTTCTAGAC
AATGACCGCCATGAACGTATCACCTACTTTGCCGGTCAACGTATCAAACAAAGTATTCAGAAACAAATATTAGGCCAGGT
AAAAAGTGTATTTTATCTTGGAGAGGACCATATTTTAAATGCAGGAATCGAATATCAGTACAATCATTTGGAATCACCTC
ATCACATTGACGGTGACCGCGCTTCCGTTTATACGTTGGCAGCTTATATACAGGAGGAATGGACAGCCAGAGAAAATCTG
GTTCTGACTGCCGGGGTACGAGGAACACAACACAAGGAAACAGGATTGAATTTCAGTCCGAAAATATCAGGACTTTATAA
ACCCGGAGAACATATTAATTTGCGTGCGTCTTATGCTTTAGGCTACAAAGCACCCACTATTAAAGAACTTTATTATAATT
ATACCGGCGTTATCGGAGGCGGTGCTTTGACTGCATATCATGGCAACACAGATCTAAAAGCACAAACCTCACAATATGCT
TCAATCGGTATCGAGTACGTAGGGCAAAAATTCCAAGCCAGTTTAACCGGATACATGAATTATCTTCACAACATGATTGA
GCTGGTTGAAATTTCCGTAACTCCCGATGAAAAGTTTCTTGAAGTAGAAAAGAGCAAACAATATAAGAATCTGACAAAGG
CACGTATTTATGGTATGGATTTCACCTTCAACTATCGTCCTGCAAAATCTCTCAGCCTTGCCGGCGGATATAGTTATGCT
GATCCAAAAGCGCAATATCCTAACAAAGGTATAGATTATATGAAATATCTTCCTATTGATGCTACTTCCAGCCATAATGC
AAATTTAAATATCTTATGGCAACATTCATGGAAACTGTATCGTTTGGGTATCGGCATCTATGGCAGATATCAGTCTACAC
GCCGTTATATAAATGATAATAATGCCGACGGATTCCAAACTTGGCGTATCAACACAGCCCACTCATTATTAAAAATGAAA
CGGTGGTCATTAACGATGAATGCCGGGGTAGATAATGTATTTGACTATGTAGACCGTACTCCTTTCGGACGGAATCGTGC
CACATCAACTCCCGGAAGAACTTTTTATGTCTCCGCCCTCATTAAATTCAAAAACAATTAA

Upstream 100 bases:

>100_bases
CCATTCGAACAAGCGTTTTCCAACGTCTATTCCTTTGTGGCATTCCTCTTTATCAGAGGGAAACTTGATGTTTTATTTTG
CAAATTAAATAAAACATAAT

Downstream 100 bases:

>100_bases
TAACCAACAATTTATAAATTAATTTTTATTAGTATGAAACAATTCAAGTATTATCTGATGGCGGCTTTTGTTGCTGCCGC
AACTTGCACAGGATTCAGTT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 686; Mature: 686

Protein sequence:

>686_residues
MRYLLPAILLLGTQIASAQSILKDKDDKELSVLLNEVVITGTGTEHYLKDAPVQTEVITSKALEQYQARSIDDLLSGLSP
SLTFHDGDMGSHIQLNGLNNDYILIMINGKRMNGDVGGQNDLNQLNPANIERIEIVKGAASSLYGSDAIAGVINIITKRN
REKMELTNTSRIGEYGDIRQSTSFGFNYRKIKSVTGINFRHTDGWRNTDLQWDQNQLKSGSTMLTVNRSSNYTLSENIEW
QVNRKLDLTAEGTYYERWVMRTHGPWKYQANDFYYRNYTFAVGSKYKLGKRNYLTADLSYGRYGYFYDYKLNEHTDYFLD
NDRHERITYFAGQRIKQSIQKQILGQVKSVFYLGEDHILNAGIEYQYNHLESPHHIDGDRASVYTLAAYIQEEWTARENL
VLTAGVRGTQHKETGLNFSPKISGLYKPGEHINLRASYALGYKAPTIKELYYNYTGVIGGGALTAYHGNTDLKAQTSQYA
SIGIEYVGQKFQASLTGYMNYLHNMIELVEISVTPDEKFLEVEKSKQYKNLTKARIYGMDFTFNYRPAKSLSLAGGYSYA
DPKAQYPNKGIDYMKYLPIDATSSHNANLNILWQHSWKLYRLGIGIYGRYQSTRRYINDNNADGFQTWRINTAHSLLKMK
RWSLTMNAGVDNVFDYVDRTPFGRNRATSTPGRTFYVSALIKFKNN

Sequences:

>Translated_686_residues
MRYLLPAILLLGTQIASAQSILKDKDDKELSVLLNEVVITGTGTEHYLKDAPVQTEVITSKALEQYQARSIDDLLSGLSP
SLTFHDGDMGSHIQLNGLNNDYILIMINGKRMNGDVGGQNDLNQLNPANIERIEIVKGAASSLYGSDAIAGVINIITKRN
REKMELTNTSRIGEYGDIRQSTSFGFNYRKIKSVTGINFRHTDGWRNTDLQWDQNQLKSGSTMLTVNRSSNYTLSENIEW
QVNRKLDLTAEGTYYERWVMRTHGPWKYQANDFYYRNYTFAVGSKYKLGKRNYLTADLSYGRYGYFYDYKLNEHTDYFLD
NDRHERITYFAGQRIKQSIQKQILGQVKSVFYLGEDHILNAGIEYQYNHLESPHHIDGDRASVYTLAAYIQEEWTARENL
VLTAGVRGTQHKETGLNFSPKISGLYKPGEHINLRASYALGYKAPTIKELYYNYTGVIGGGALTAYHGNTDLKAQTSQYA
SIGIEYVGQKFQASLTGYMNYLHNMIELVEISVTPDEKFLEVEKSKQYKNLTKARIYGMDFTFNYRPAKSLSLAGGYSYA
DPKAQYPNKGIDYMKYLPIDATSSHNANLNILWQHSWKLYRLGIGIYGRYQSTRRYINDNNADGFQTWRINTAHSLLKMK
RWSLTMNAGVDNVFDYVDRTPFGRNRATSTPGRTFYVSALIKFKNN
>Mature_686_residues
MRYLLPAILLLGTQIASAQSILKDKDDKELSVLLNEVVITGTGTEHYLKDAPVQTEVITSKALEQYQARSIDDLLSGLSP
SLTFHDGDMGSHIQLNGLNNDYILIMINGKRMNGDVGGQNDLNQLNPANIERIEIVKGAASSLYGSDAIAGVINIITKRN
REKMELTNTSRIGEYGDIRQSTSFGFNYRKIKSVTGINFRHTDGWRNTDLQWDQNQLKSGSTMLTVNRSSNYTLSENIEW
QVNRKLDLTAEGTYYERWVMRTHGPWKYQANDFYYRNYTFAVGSKYKLGKRNYLTADLSYGRYGYFYDYKLNEHTDYFLD
NDRHERITYFAGQRIKQSIQKQILGQVKSVFYLGEDHILNAGIEYQYNHLESPHHIDGDRASVYTLAAYIQEEWTARENL
VLTAGVRGTQHKETGLNFSPKISGLYKPGEHINLRASYALGYKAPTIKELYYNYTGVIGGGALTAYHGNTDLKAQTSQYA
SIGIEYVGQKFQASLTGYMNYLHNMIELVEISVTPDEKFLEVEKSKQYKNLTKARIYGMDFTFNYRPAKSLSLAGGYSYA
DPKAQYPNKGIDYMKYLPIDATSSHNANLNILWQHSWKLYRLGIGIYGRYQSTRRYINDNNADGFQTWRINTAHSLLKMK
RWSLTMNAGVDNVFDYVDRTPFGRNRATSTPGRTFYVSALIKFKNN

Specific function: Not yet known. Postulated to participate in iron transport. Outer membrane receptor for colicins IA and IB [H]

COG id: COG4771

COG function: function code P; Outer membrane receptor for ferrienterochelin and colicins

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1788478, Length=685, Percent_Identity=25.2554744525547, Blast_Score=153, Evalue=4e-38,
Organism=Escherichia coli, GI1790405, Length=136, Percent_Identity=33.8235294117647, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1786798, Length=287, Percent_Identity=25.0871080139373, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010916
- InterPro:   IPR010917 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 78363; Mature: 78363

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLLPAILLLGTQIASAQSILKDKDDKELSVLLNEVVITGTGTEHYLKDAPVQTEVITS
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEEEECCCCHHHHHCCCCHHHHHHH
KALEQYQARSIDDLLSGLSPSLTFHDGDMGSHIQLNGLNNDYILIMINGKRMNGDVGGQN
HHHHHHHHCCHHHHHCCCCCCEEEECCCCCCEEEEECCCCCEEEEEEECCEECCCCCCCC
DLNQLNPANIERIEIVKGAASSLYGSDAIAGVINIITKRNREKMELTNTSRIGEYGDIRQ
CCCCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC
STSFGFNYRKIKSVTGINFRHTDGWRNTDLQWDQNQLKSGSTMLTVNRSSNYTLSENIEW
CCCCCCCCEEEHHCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEECCCCEEECCCCEE
QVNRKLDLTAEGTYYERWVMRTHGPWKYQANDFYYRNYTFAVGSKYKLGKRNYLTADLSY
EECCEEEEEECCCEEEEEEEECCCCEEECCCEEEEEEEEEEECCCEECCCCCEEEEECCC
GRYGYFYDYKLNEHTDYFLDNDRHERITYFAGQRIKQSIQKQILGQVKSVFYLGEDHILN
CCEEEEEEEEECCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEECCCEEEE
AGIEYQYNHLESPHHIDGDRASVYTLAAYIQEEWTARENLVLTAGVRGTQHKETGLNFSP
CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
KISGLYKPGEHINLRASYALGYKAPTIKELYYNYTGVIGGGALTAYHGNTDLKAQTSQYA
CCCCEECCCCCEEEEEEEEECCCCCHHHHHHHCCCEEECCCEEEEEECCCCCCCCCHHHH
SIGIEYVGQKFQASLTGYMNYLHNMIELVEISVTPDEKFLEVEKSKQYKNLTKARIYGMD
HHHHHHHCHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEE
FTFNYRPAKSLSLAGGYSYADPKAQYPNKGIDYMKYLPIDATSSHNANLNILWQHSWKLY
EEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCEEE
RLGIGIYGRYQSTRRYINDNNADGFQTWRINTAHSLLKMKRWSLTMNAGVDNVFDYVDRT
EEEEEEEECCHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHEEEECCCHHHHHHHHHCC
PFGRNRATSTPGRTFYVSALIKFKNN
CCCCCCCCCCCCCEEEEEEEEEECCC
>Mature Secondary Structure
MRYLLPAILLLGTQIASAQSILKDKDDKELSVLLNEVVITGTGTEHYLKDAPVQTEVITS
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEEEECCCCHHHHHCCCCHHHHHHH
KALEQYQARSIDDLLSGLSPSLTFHDGDMGSHIQLNGLNNDYILIMINGKRMNGDVGGQN
HHHHHHHHCCHHHHHCCCCCCEEEECCCCCCEEEEECCCCCEEEEEEECCEECCCCCCCC
DLNQLNPANIERIEIVKGAASSLYGSDAIAGVINIITKRNREKMELTNTSRIGEYGDIRQ
CCCCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC
STSFGFNYRKIKSVTGINFRHTDGWRNTDLQWDQNQLKSGSTMLTVNRSSNYTLSENIEW
CCCCCCCCEEEHHCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEECCCCEEECCCCEE
QVNRKLDLTAEGTYYERWVMRTHGPWKYQANDFYYRNYTFAVGSKYKLGKRNYLTADLSY
EECCEEEEEECCCEEEEEEEECCCCEEECCCEEEEEEEEEEECCCEECCCCCEEEEECCC
GRYGYFYDYKLNEHTDYFLDNDRHERITYFAGQRIKQSIQKQILGQVKSVFYLGEDHILN
CCEEEEEEEEECCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEECCCEEEE
AGIEYQYNHLESPHHIDGDRASVYTLAAYIQEEWTARENLVLTAGVRGTQHKETGLNFSP
CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
KISGLYKPGEHINLRASYALGYKAPTIKELYYNYTGVIGGGALTAYHGNTDLKAQTSQYA
CCCCEECCCCCEEEEEEEEECCCCCHHHHHHHCCCEEECCCEEEEEECCCCCCCCCHHHH
SIGIEYVGQKFQASLTGYMNYLHNMIELVEISVTPDEKFLEVEKSKQYKNLTKARIYGMD
HHHHHHHCHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEE
FTFNYRPAKSLSLAGGYSYADPKAQYPNKGIDYMKYLPIDATSSHNANLNILWQHSWKLY
EEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCEEE
RLGIGIYGRYQSTRRYINDNNADGFQTWRINTAHSLLKMKRWSLTMNAGVDNVFDYVDRT
EEEEEEEECCHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHEEEECCCHHHHHHHHHCC
PFGRNRATSTPGRTFYVSALIKFKNN
CCCCCCCCCCCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2644220; 9278503; 3316180; 1315732; 2160948 [H]